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[187187_at]

Description Y71F9AL.12 /REP_DB=WormBase Gene ID /WP=CE25551 /TR=Q9N4I5 /GB=AAF36007.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 09      4grp_high_8_8 > 23      6grp_total > 03      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 51
(-2.2)
P 		65.5
(-1)
P 		40.2
(-3)
A 		117.7
(3)
P 		78
B 86.6
(-3)
P 		92.2
(-1.5)
P 		102.3
(1.2)
P 		109
(3)
A 		22
C 67.8
(-0.2)
P 		17.5
(-3)
A 		92.8
(1.2)
P 		126.1
(3)
P 		109
avr 68.5
(-2) 		58.4
(-3) 		78.4
(-1) 		117.6
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 72.9
(2.9)
P 		71.4
(2.2)
P 		69
(1.1)
P 		73.2
(3)
P 		66.4
(-0)
A 		59.8
(-3)
P 		13
B 79
(1.1)
P 		77.9
(0.7)
P 		68.1
(-3)
P 		84.2
(3)
P 		80.7
(1.7)
P 		69.7
(-2.4)
P 		16
C 82.8
(1.2)
P 		93.2
(3)
P 		64
(-2.1)
M 		83.7
(1.3)
A 		64.8
(-2)
A 		58.9
(-3)
A 		34
avr 78.2
(2.1) 		80.8
(3) 		67
(-1.6) 		80.4
(2.9) 		70.6
(-0.4) 		62.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 18.6
(3)
P 		14.2
(-0.3)
P 		10.5
(-3)
A 		17.2
(2)
P 		8
B 27.6
(3)
P 		22.8
(-3)
P 		23.7
(-1.9)
P 		23.2
(-2.5)
A 		5
C 22.4
(0.8)
P 		5
(-3)
A 		32.3
(3)
P 		21.3
(0.6)
P 		27
avr 22.9
(3) 		14
(-3) 		22.2
(2.5) 		20.6
(1.4) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 13.4
(-3)
P 		25.4
(3)
P 		15
(-2.2)
P 		18.6
(-0.4)
P 		20
(0.3)
A 		14.6
(-2.4)
P 		12
B 27.5
(1)
P 		25.9
(0.5)
P 		16.5
(-3)
P 		22.3
(-0.9)
P 		32.8
(3)
P 		26
(0.5)
P 		16
C 30.7
(3)
P 		28.4
(2)
P 		16.3
(-3)
M 		16.8
(-2.8)
A 		21
(-1)
A 		19.7
(-1.6)
A 		14
avr 23.9
(1.5) 		26.6
(3) 		15.9
(-3) 		19.2
(-1.1) 		24.6
(1.9) 		20.1
(-0.6) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.188
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.12 NCBI
Target Description Y71F9AL.12 /REP_DB=WormBase Gene ID /WP=CE25551 /TR=Q9N4I5 /GB=AAF36007.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058659(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058659 NCBI Caenorhabditis elegans Y71F9AL.12 (Y71F9AL.12) mRNA, complete cds. 11/11 None
SNAP00000005884 ENSEMBL cdna:SNAP chromosome:CEL140:I:2870609:2875290:-1 11/11 None
GENEFINDER00000005912 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2870609:2875290:-1 11/11 None
Y71F9AL.12 ENSEMBL cdna:known chromosome:CEL140:I:2871258:2875290:-1 gene:Y71F9AL.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2871257-2875290(-) 89.76 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.12
Entrez Gene 190588 Entrez gene
SwissProt Q9N4I5 EMBL-EBI
WormBase CE25551 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36007 Hypothetical protein Y71F9AL.12 [Caenorhabditis elegans] ref|NP_491060.1| Y71F9AL.12 [Caenorhabditis elegans] 1.0E-150
blast AAF36007 Hypothetical protein Y71F9AL.12 [Caenorhabditis elegans] ref|NP_491060.1| Y71F9AL.12 [Caenorhabditis elegans] 1.0E-119
blast AAF36007 Hypothetical protein Y71F9AL.12 [Caenorhabditis elegans] ref|NP_491060.1| Y71F9AL.12 [Caenorhabditis elegans] 1.0E-113
blast CAE60593 Hypothetical protein CBG04229 [Caenorhabditis briggsae] 4.0E-76
blast CAE60593 Hypothetical protein CBG04229 [Caenorhabditis briggsae] 1.0E-70
blast CAE60593 Hypothetical protein CBG04229 [Caenorhabditis briggsae] 3.0E-52
Sequence
Target Sequence 
>C. ELEGANS:187187_AT
ggaatcactggaactatgtccggattttgatggacttgaaaaatttgttgccgaaaatga
gttcgaagttgttttcctgaaaccgaatgagggtacactctcgaatttcatggacgatga
agcagatccaacagagtataatatgaatgaagatgatacgatctctggaccggctgccgt
tcgcaacacccaaaaattttccaatttttccagagaaaaccgaaaaatcataatttttat
caaaaaaattaacaaaaaattcaatttatttgaaaaccaattaattcgtcactttgctca
atggatagatcaaaacccggacgccacaattccagctccacaacacgcggaaagagttaa
cctgtcaccagattcaccaacaactaccgagggaacaacgaatcaggatgatgtatcgat
ttctgttgatattgatctcgtttgtgcaacaaagaatctgggagaaaatggtggatcttc
cggggagaatgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATCACTGGAACTATGTCCGGAT 85 533 351 Antisense
ATGAGTTCGAAGTTGTTTTCCTGAA 148 47 407 Antisense
AGGGTACACTCTCGAATTTCATGGA 335 55 440 Antisense
AGATGATACGATCTCTGGACCGGCT 402 67 501 Antisense
TTAATTCGTCACTTTGCTCAATGGA 50 685 631 Antisense
ATAGATCAAAACCCGGACGCCACAA 638 17 655 Antisense
GCGGAAAGAGTTAACCTGTCACCAG 639 291 697 Antisense
TTAACCTGTCACCAGATTCACCAAC 240 685 707 Antisense
GATTCACCAACAACTACCGAGGGAA 183 431 721 Antisense
GATTTCTGTTGATATTGATCTCGTT 202 429 768 Antisense
GGTGGATCTTCCGGGGAGAATGAGA 622 497 820 Antisense
Sequence Source Affymetrix Proprietary Database