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[187186_at]

Description ZK1320.1 /REP_DB=WormBase Gene ID /WP=CE01698 /TR=SW:Q09652 /GB=CAA87039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 21      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_highest_nonorm > 32      6grp_total > 32      4grp_total > 32      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1019
1 2 3 4 range
A 669
(-3)
P 		796.7
(-2.2)
P 		1449
(2.1)
P 		1584.6
(3)
P 		916
B 740.2
(-3)
P 		900.2
(-2)
P 		1687.5
(3)
P 		1496.8
(1.8)
P 		947
C 740.1
(-3)
P 		816.1
(-2.4)
P 		1462.5
(2.3)
P 		1557.7
(3)
P 		818
avr 716.4
(-3) 		837.7
(-2.1) 		1533
(2.9) 		1546.4
(3) 		830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1316
1 2 3 4 5 6 range
A 1410.3
(1.2)
P 		1362.1
(0.9)
P 		1795.1
(3)
P 		1141.7
(-0.1)
P 		855.4
(-1.5)
P 		545.7
(-3)
P 		1249
B 1303.8
(0.2)
P 		1369.1
(0.6)
P 		1862.1
(3)
P 		1160
(-0.5)
P 		798.7
(-2.3)
P 		651.5
(-3)
P 		1211
C 1155.3
(0.3)
P 		1515.4
(2.6)
P 		1581.4
(3)
P 		1337.8
(1.5)
P 		629.7
(-3)
P 		638.2
(-2.9)
P 		952
avr 1289.8
(0.6) 		1415.5
(1.3) 		1746.2
(3) 		1213.2
(0.2) 		761.3
(-2.2) 		611.8
(-3) 		1134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 243.6
(-0.9)
P 		172.9
(-3)
P 		378.8
(3)
P 		232
(-1.3)
P 		206
B 236
(-2.5)
P 		222.3
(-3)
P 		391
(3)
P 		319
(0.4)
P 		169
C 245
(-2.8)
P 		234.6
(-3)
P 		509.7
(3)
P 		262.7
(-2.4)
P 		275
avr 241.5
(-2.1) 		209.9
(-3) 		426.5
(3) 		271.2
(-1.3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 352
1 2 3 4 5 6 range
A 260
(-0.8)
P 		484.4
(3)
P 		390.9
(1.4)
P 		289.6
(-0.3)
P 		258.1
(-0.9)
P 		132.9
(-3)
P 		352
B 453.7
(2.9)
P 		455.7
(3)
P 		452.2
(2.9)
P 		307.3
(-1.2)
P 		324.5
(-0.7)
P 		242.9
(-3)
P 		213
C 428.2
(2.2)
P 		462.4
(3)
P 		402.5
(1.6)
P 		269
(-1.5)
P 		203.8
(-3)
P 		213.6
(-2.8)
P 		259
avr 380.6
(1.1) 		467.5
(3) 		415.2
(1.8) 		288.6
(-1) 		262.1
(-1.5) 		196.5
(-3) 		271
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3572
Sequence Type Exemplar sequence
Representative Public ID ZK1320.1 NCBI
Target Description ZK1320.1 /REP_DB=WormBase Gene ID /WP=CE01698 /TR=SW:Q09652 /GB=CAA87039.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063681(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063681 NCBI Caenorhabditis elegans ZK1320.1 (ZK1320.1) mRNA, complete cds. 11/11 None
SNAP00000038579 ENSEMBL cdna:SNAP chromosome:CEL140:II:9656660:9657573:1 11/11 None
GENEFINDER00000038595 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9656660:9657573:1 11/11 None
ZK1320.1 ENSEMBL cdna:known chromosome:CEL140:II:9656660:9657573:1 gene:ZK1320.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9656656-9657570(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1320.1
Entrez Gene 191563 Entrez gene
SwissProt Q09652 EMBL-EBI
WormBase CE01698 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601027_AT similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (hGSTK1) cfa
CANINE:1584153_S_AT similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (hGSTK1) cfa
CANINE_2:CFA.10148.1.A1_AT similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (hGSTK1) cfa
CANINE_2:CFAAFFX.6411.1.S1_AT similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (hGSTK1) cfa
CANINE_2:CFAAFFX.6411.1.S1_S_AT similar to Glutathione S-transferase kappa 1 (GST 13-13) (Glutathione S-transferase subunit 13) (GST class-kappa) (GSTK1-1) (hGSTK1) cfa
CHICKEN:GGA.14517.1.S1_S_AT glutathione S-transferase kappa 1 gga
CHICKEN:GGA.5689.1.S1_AT glutathione S-transferase kappa 1 gga
HG-U133_PLUS_2:217751_AT glutathione S-transferase kappa 1 hs
HG-U133A_2:217751_AT glutathione S-transferase kappa 1 hs
HG-U133A:217751_AT glutathione S-transferase kappa 1 hs
HG-FOCUS:217751_AT glutathione S-transferase kappa 1 hs
HU35KSUBA:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HU35KSUBB:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HU35KSUBC:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HU35KSUBD:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HUGENEFL:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HC-G110:HUM_ALU_AT glutathione S-transferase kappa 1 hs
HU35KSUBB:RC_H59261_AT glutathione S-transferase kappa 1 hs
U133_X3P:G7705703_3P_AT glutathione S-transferase kappa 1 hs
U133_X3P:HS.143868.0.A1_3P_AT glutathione S-transferase kappa 1 hs
HG-U95C:65901_AT glutathione S-transferase kappa 1 hs
HG-U95D:74584_AT glutathione S-transferase kappa 1 hs
HG-U95D:74587_G_AT glutathione S-transferase kappa 1 hs
HG-U95E:91434_AT glutathione S-transferase kappa 1 hs
HG-U133_PLUS_2:243325_AT Glutathione S-transferase kappa 1 hs
HG-U133B:243325_AT Glutathione S-transferase kappa 1 hs
HG-U95B:51506_AT Glutathione S-transferase kappa 1 hs
HU35KSUBA:AA027793_AT Glutathione S-transferase kappa 1 hs
HU35KSUBB:RC_W88497_AT Glutathione S-transferase kappa 1 hs
U133_X3P:HS.20152.0.A1_3P_AT Glutathione S-transferase kappa 1 hs
MG-U74AV2:96670_AT glutathione S-transferase kappa 1 mm
MOE430A:1452823_AT glutathione S-transferase kappa 1 mm
MOUSE430A_2:1452823_AT glutathione S-transferase kappa 1 mm
MOUSE430_2:1452823_AT glutathione S-transferase kappa 1 mm
MU19KSUBA:TC20341_AT Glutathione S-transferase kappa 1 (Gstk1), mRNA mm
MU19KSUBB:TC32224_AT Glutathione S-transferase kappa 1 (Gstk1), mRNA mm
MU19KSUBB:TC33871_S_AT Glutathione S-transferase kappa 1 (Gstk1), mRNA mm
RT-U34:RC_AI105137_S_AT glutathione S-transferase kappa 1 rn
RG-U34A:RC_AI105137_S_AT glutathione S-transferase kappa 1 rn
RT-U34:S83436_I_AT glutathione S-transferase kappa 1 rn
RG-U34A:S83436_I_AT glutathione S-transferase kappa 1 rn
RAE230A:1398378_AT glutathione S-transferase kappa 1 rn
RAT230_2:1398378_AT glutathione S-transferase kappa 1 rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15035 protein disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87039 Hypothetical protein ZK1320.1 [Caenorhabditis elegans] ref|NP_496082.1| ZK1320.1 [Caenorhabditis elegans] sp|Q09652|YS21_CAEEL Hypothetical protein ZK1320.1 in chromosome II 1.0E-122
blast CAE65446 Hypothetical protein CBG10410 [Caenorhabditis briggsae] 5.0E-86
blast AAH87819 Glutathione S-transferase kappa 1 [Xenopus tropicalis] ref|NP_001011244.1| glutathione S-transferase kappa 1 [Xenopus tropicalis] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001853 EMBL-EBI DSBA oxidoreductase 7.5E-81
Sequence
Target Sequence 
>C. ELEGANS:187186_AT
gttatattgcttttgaggtcttccaaaaactggaaacccaatggaaaggagtaacaatcc
gttacattccatttttcctcggagccgtcatgaaagaatcaggaaatcgtcctccagcaa
tgctcccagctcgatcaattatgatgatgactgatttgaagcgaactgcaaagttctggg
atattccattgactccaccaccattgttcatggaatggatcaaaaagtaccgtactactg
gagcaatgaaggttttgttggttttgcaggagcaggataaggagctgatgctccgagcag
ctcgggaaatgtgggtcagattgtggtctcgaagtgagaagatttttgaggatcaagact
ttgtggaagtattgaaggcagttggtgttaagaatccggagcaaattgtggaaaagagca
aggatgagaaatatataaagattttgatggagaatacgaataagggagttgatttgatgg
catatggtgctccatggatcaatgtgcacacagaagatggatcggagcattcattctttg
gatcagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATATTGCTTTTGAGGTCTTCCA 475 447 65 Antisense
GTTACATTCCATTTTTCCTCGGAGC 231 447 125 Antisense
TCCTCGGAGCCGTCATGAAAGAATC 285 591 140 Antisense
GAATCAGGAAATCGTCCTCCAGCAA 487 327 160 Antisense
CAATGCTCCCAGCTCGATCAATTAT 155 183 182 Antisense
TGGGATATTCCATTGACTCCACCAC 429 553 241 Antisense
GACTCCACCACCATTGTTCATGGAA 646 373 255 Antisense
GGAGCTGATGCTCCGAGCAGCTCGG 360 519 345 Antisense
GAGCAGCTCGGGAAATGTGGGTCAG 336 387 359 Antisense
GTGGGTCAGATTGTGGTCTCGAAGT 241 489 375 Antisense
GAGCATTCATTCTTTGGATCAGACC 277 389 589 Antisense
Sequence Source Affymetrix Proprietary Database