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[187185_at]

Description Y71F9AL.10 /REP_DB=WormBase Gene ID /WP=CE24610 /TR=Q9N4I6 /GB=AAF35997.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 10      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 253
1 2 3 4 range
A 246.7
(-0.4)
A 		196.8
(-1.6)
A 		143.9
(-3)
A 		377.8
(3)
A 		234
B 170.9
(-3)
A 		236.3
(-1.3)
A 		232
(-1.4)
A 		397.2
(3)
A 		226
C 205.2
(-3)
A 		269.7
(-0.5)
A 		209.5
(-2.8)
A 		362.4
(3)
P 		157
avr 207.6
(-2.6) 		234.3
(-1.7) 		195.1
(-3) 		379.1
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 142.9
(-1.3)
A 		130.5
(-1.8)
A 		178.3
(0.2)
A 		103.4
(-3)
A 		243.8
(3)
A 		227.8
(2.3)
M 		140
B 111.8
(-3)
A 		118.8
(-2.6)
A 		161.1
(-0.3)
A 		173.1
(0.3)
A 		188.4
(1.2)
M 		221.9
(3)
P 		110
C 105.9
(-3)
A 		113.2
(-2.7)
A 		110.9
(-2.8)
A 		116.2
(-2.6)
A 		178.2
(-0.2)
A 		263.1
(3)
P 		157
avr 120.2
(-3) 		120.8
(-3) 		150.1
(-1.5) 		130.9
(-2.5) 		203.5
(1.3) 		237.6
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 89.8
(3)
A 		42.7
(-2.4)
A 		37.6
(-3)
A 		55.3
(-1)
A 		52
B 54.5
(-2.9)
A 		58.4
(-2.1)
A 		53.8
(-3)
A 		84.6
(3)
A 		31
C 67.9
(-0.5)
A 		77.5
(3)
A 		73
(1.4)
A 		61.1
(-3)
P 		16
avr 70.7
(3) 		59.5
(-1.2) 		54.8
(-3) 		67
(1.6) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 26.3
(-3)
A 		46.4
(-0.4)
A 		38.8
(-1.4)
A 		26.2
(-3)
A 		73.6
(3)
A 		55.5
(0.7)
M 		47
B 38.9
(-3)
A 		39.5
(-2.9)
A 		39.1
(-3)
A 		45.8
(-2.1)
A 		76.5
(2.1)
M 		82.8
(3)
P 		44
C 39.3
(-1.5)
A 		34.5
(-2)
A 		28.2
(-2.6)
A 		23.4
(-3)
A 		57.7
(0.2)
A 		88.1
(3)
P 		65
avr 34.8
(-2.6) 		40.1
(-1.9) 		35.4
(-2.5) 		31.8
(-3) 		69.3
(2.1) 		75.5
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.77
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.10 NCBI
Target Description Y71F9AL.10 /REP_DB=WormBase Gene ID /WP=CE24610 /TR=Q9N4I6 /GB=AAF35997.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058658(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058658 NCBI Caenorhabditis elegans Y71F9AL.10 (Y71F9AL.10) mRNA, complete cds. 11/11 None
GENEFINDER00000005914 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2863451:2869259:1 11/11 None
Y71F9AL.10 ENSEMBL cdna:known chromosome:CEL140:I:2866509:2870106:1 gene:Y71F9AL.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2867429-2869255(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.10
Entrez Gene 171852 Entrez gene
SwissProt Q9N4I6 EMBL-EBI
WormBase CE31386 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1627565_AT dm
DROSGENOME1:144622_AT dm
CHICKEN:GGA.13366.1.S1_AT zinc and ring finger 2 gga
HU35KSUBA:RC_AA281298_AT zinc and ring finger 2 hs
HU35KSUBB:RC_R26164_AT zinc and ring finger 2 hs
U133_X3P:HS.127294.0.A1_3P_AT zinc and ring finger 2 hs
HG-U133_PLUS_2:226261_AT zinc and ring finger 2 hs
HG-U133B:226261_AT zinc and ring finger 2 hs
HG-U95C:60835_AT zinc and ring finger 2 hs
HG-U133_PLUS_2:229188_S_AT Zinc and ring finger 2 hs
HG-U133B:229188_S_AT Zinc and ring finger 2 hs
HG-U95B:57651_AT Zinc and ring finger 2 hs
HG-U95D:70315_AT Zinc and ring finger 2 hs
HU35KSUBA:AA286726_AT Zinc and ring finger 2 hs
HU35KSUBD:RC_H15164_AT Zinc and ring finger 2 hs
U133_X3P:HS.127294.1.A1_3P_AT Zinc and ring finger 2 hs
MOUSE430A_2:1455290_AT zinc and ring finger 2 mm
MOE430A:1455290_AT zinc and ring finger 2 mm
MOUSE430_2:1455290_AT zinc and ring finger 2 mm
MU11KSUBA:AA607936_AT zinc and ring finger 2 mm
MU11KSUBA:AA177625_S_AT zinc and ring finger 2 mm
MG-U74AV2:104418_AT zinc and ring finger 2 mm
MG-U74AV2:99574_AT zinc and ring finger 2 mm
MOE430A:1455291_S_AT zinc and ring finger 2 mm
MOUSE430A_2:1455291_S_AT zinc and ring finger 2 mm
MOUSE430_2:1455291_S_AT zinc and ring finger 2 mm
MOE430A:1434016_AT zinc and ring finger 2 mm
MOUSE430A_2:1434016_AT zinc and ring finger 2 mm
MOUSE430_2:1434016_AT zinc and ring finger 2 mm
MOE430A:1434017_AT zinc and ring finger 2 mm
MOUSE430A_2:1434017_AT zinc and ring finger 2 mm
MOUSE430_2:1434017_AT zinc and ring finger 2 mm
MOE430B:1431154_AT zinc and ring finger 2 mm
MOUSE430_2:1431154_AT zinc and ring finger 2 mm
MG-U74BV2:107454_AT zinc and ring finger 2 mm
MG-U74AV2:104396_AT Zinc and ring finger 2 (Znrf2), mRNA mm
MOUSE430_2:1444735_AT Zinc and ring finger 2 (Znrf2), mRNA mm
MOE430B:1444735_AT Zinc and ring finger 2 (Znrf2), mRNA mm
MU11KSUBA:AA210330_S_AT Zinc and ring finger 2 (Znrf2), mRNA mm
MU11KSUBB:W91033_S_AT Zinc and ring finger 2 (Znrf2), mRNA mm
RG-U34C:RC_AI105145_AT zinc and ring finger 1 (predicted) rn
RAE230B:1379264_AT zinc and ring finger 1 (predicted) rn
RAT230_2:1379264_AT zinc and ring finger 1 (predicted) rn
RAE230B:1383184_AT zinc and ring finger 1 (predicted) rn
RAT230_2:1383184_AT zinc and ring finger 1 (predicted) rn
RAE230B:1377850_AT Zinc and ring finger 1 (predicted) rn
RAT230_2:1377850_AT Zinc and ring finger 1 (predicted) rn
RG-U34C:RC_AI178231_AT Zinc and ring finger 1 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF35997 Hypothetical protein Y71F9AL.10 [Caenorhabditis elegans] ref|NP_491059.2| Y71F9AL.10 [Caenorhabditis elegans] 5.0E-95
blast AAF35997 Hypothetical protein Y71F9AL.10 [Caenorhabditis elegans] ref|NP_491059.2| Y71F9AL.10 [Caenorhabditis elegans] 2.0E-72
blast CAE60594 Hypothetical protein CBG04230 [Caenorhabditis briggsae] 2.0E-71
blast AAF35996 Hypothetical protein Y71F9AL.11 [Caenorhabditis elegans] ref|NP_491058.1| Y71F9AL.11 [Caenorhabditis elegans] 2.0E-57
blast CAE60594 Hypothetical protein CBG04230 [Caenorhabditis briggsae] 4.0E-56
blast XP_872600 PREDICTED: similar to zinc finger/RING finger 2 [Bos taurus] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 8.8E-7
Sequence
Target Sequence 
>C. ELEGANS:187185_AT
gcgcgatttctgagctcatcatcggattcgaatgcttctgaagacgacgcagggccctcc
cattcgacgacgcatgggaatcgttcacgaggactacacgcgactcctggacgacttcac
gggcaccatagccgtcgatcggttcctgtctttatgatggatatgaaatgcccggtttgt
cacaaagttgtaccatcggacgacgcggatattcatctggtcatgtgcctgacgagaccc
aaaattacctataatgatgacgtgctaaaagacgacaaaggagaatgttcgatttgtctg
gaagacctcgaagctggacacaaaatagcacgattaccatgtctatgtatctacca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCGATTTCTGAGCTCATCATCGG 524 287 22 Antisense
TGCTTCTGAAGACGACGCAGGGCCC 288 579 54 Antisense
CCCTCCCATTCGACGACGCATGGGA 75 261 76 Antisense
ATCGTTCACGAGGACTACACGCGAC 418 35 101 Antisense
TCGATCGGTTCCTGTCTTTATGATG 291 603 156 Antisense
GATATGAAATGCCCGGTTTGTCACA 417 425 181 Antisense
GTACCATCGGACGACGCGGATATTC 51 459 211 Antisense
GCGGATATTCATCTGGTCATGTGCC 500 293 226 Antisense
GGTCATGTGCCTGACGAGACCCAAA 480 495 240 Antisense
GAAGACCTCGAAGCTGGACACAAAA 543 339 322 Antisense
GATTACCATGTCTATGTATCTACCA 437 429 353 Antisense
Sequence Source Affymetrix Proprietary Database