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[187184_s_at]

Description F56D2.6 /REP_DB=WormBase Gene ID /WP=CE01334 /TR=SW:Q20875 /GB=AAB52678.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 74      6grp_high1_10_10 > 46      4grp_highest_8_8 > 25      4grp_high_8_8 > 59      6grp_highest_nonorm > 76      6grp_total > 46      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 842
1 2 3 4 range
A 1611.8
(3)
P 		1530.7
(2.4)
P 		1586.5
(2.8)
P 		770.1
(-3)
P 		842
B 1327.9
(1)
P 		1455.1
(3)
P 		1456.6
(3)
P 		1075.4
(-3)
P 		381
C 1496.9
(2.5)
P 		1501
(2.5)
P 		1558.6
(3)
P 		833.2
(-3)
P 		725
avr 1478.9
(2.5) 		1495.6
(2.6) 		1533.9
(3) 		892.9
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 1116.9
(-1.2)
P 		1306.8
(2)
P 		1009.4
(-3)
P 		1091.5
(-1.6)
P 		1075.3
(-1.9)
P 		1368.8
(3)
P 		359
B 1427.1
(3)
P 		1227.9
(0.8)
P 		1204.5
(0.5)
P 		1118.1
(-0.5)
P 		894.1
(-3)
P 		1317
(1.8)
P 		533
C 1431.7
(3)
P 		1183.7
(-2.6)
P 		1366.3
(1.5)
P 		1259
(-0.9)
P 		1167.3
(-3)
P 		1375
(1.7)
P 		264
avr 1325.2
(2.4) 		1239.5
(0.8) 		1193.4
(-0.1) 		1156.2
(-0.8) 		1045.6
(-3) 		1353.6
(3) 		308
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 474
1 2 3 4 range
A 586.9
(3)
P 		332.3
(-0.2)
P 		414.7
(0.8)
P 		112.7
(-3)
P 		474
B 423.5
(3)
P 		359.4
(1)
P 		337.5
(0.3)
P 		229.2
(-3)
P 		194
C 495.5
(2.3)
P 		431.6
(1.3)
P 		543.2
(3)
P 		140.5
(-3)
P 		403
avr 502
(3) 		374.4
(0.8) 		431.8
(1.8) 		160.8
(-3) 		341

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 325
1 2 3 4 5 6 range
A 205.9
(-3)
P 		464.8
(3)
P 		219.8
(-2.7)
P 		276.8
(-1.4)
P 		324.5
(-0.3)
P 		333.3
(-0)
P 		259
B 496.6
(3)
P 		408.7
(0.4)
P 		292.5
(-3)
P 		296.1
(-2.9)
P 		363.3
(-0.9)
P 		491.1
(2.8)
P 		204
C 530.7
(3)
P 		361.2
(-0.7)
P 		347.8
(-1)
P 		253.2
(-3)
P 		377.7
(-0.3)
P 		460.3
(1.5)
P 		278
avr 411.1
(2.3) 		411.6
(2.3) 		286.7
(-2.6) 		275.4
(-3) 		355.2
(0.1) 		428.2
(3) 		153
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187184_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7711
Sequence Type Exemplar sequence
Representative Public ID F56D2.6 NCBI
Target Description F56D2.6 /REP_DB=WormBase Gene ID /WP=CE01334 /TR=SW:Q20875 /GB=AAB52678.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171130(11), NM_171131(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171130 NCBI Caenorhabditis elegans F56D2.6a (F56D2.6) mRNA, complete cds. 11/11 None
NM_171131 NCBI Caenorhabditis elegans F56D2.6b (F56D2.6) mRNA, complete cds. 10/11 None
SNAP00000013290 ENSEMBL cdna:SNAP chromosome:CEL140:III:5589232:5591659:-1 11/11 None
GENEFINDER00000013294 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5589232:5591659:-1 11/11 None
F56D2.6a ENSEMBL cdna:known chromosome:CEL140:III:5588989:5591659:-1 gene:F56D2.6 11/11 A 
F56D2.6b.2 ENSEMBL cdna:known chromosome:CEL140:III:5589058:5591671:-1 gene:F56D2.6 10/11 None
F56D2.6b.1 ENSEMBL cdna:known chromosome:CEL140:III:5589058:5591672:-1 gene:F56D2.6 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5589230-5591658(-) 100.0 100.0
Public Domain and Genome References
Ensembl F56D2.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52678 Hypothetical protein F56D2.6a [Caenorhabditis elegans] ref|NP_741147.1| F56D2.6a [Caenorhabditis elegans] sp|Q20875|DHX15_CAEEL Putative pre-mRNA splicing factor ATP-dependent RNA helicase F56D2.6 0.0
blast CAE64301 Hypothetical protein CBG08977 [Caenorhabditis briggsae] 0.0
blast AAM48536 Hypothetical protein F56D2.6b [Caenorhabditis elegans] ref|NP_741148.2| F56D2.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 3.3E-48
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 9.4E-13
Sequence
Target Sequence 
>C. ELEGANS:187184_S_AT
cagtgctgggttcgtcccaatgaaatgagaacagaagccgatgaggcgaaggctcggttt
gcacatattgatggagatcatctcacacttctcaatgtctatcattcgttcaagcagaat
caagaagatccgcagtggtgttacgataacttcatcaactacagaactatgaaaactgcc
gacacagtccgcacacaattgtcgcgtgttatggacaagtacaatcttcgacgtgtctca
acagacttcaaatctcgagactattatctcaacatcaggaaagctcttgtagctggattt
ttcatgcaagtcgctcatctggaacgaagtggacactacgtgacggtgaaagataatcag
ctcgtcaaccttcatccatccacagttctcgatcataagccggagtgggcactctacaat
gagttcgtgttaaccacaaagaacttcatcagaactgtaactgatgtgcgccctgaatgg
ctacttcaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTGCTGGGTTCGTCCCAATGAAA 658 207 1636 Antisense
GCGAAGGCTCGGTTTGCACATATTG 613 287 1681 Antisense
AGATCATCTCACACTTCTCAATGTC 117 67 1710 Antisense
GAAGATCCGCAGTGGTGTTACGATA 671 335 1759 Antisense
ATGAAAACTGCCGACACAGTCCGCA 289 45 1804 Antisense
ACAGTCCGCACACAATTGTCGCGTG 225 107 1819 Antisense
GTACAATCTTCGACGTGTCTCAACA 595 461 1854 Antisense
TTCATGCAAGTCGCTCATCTGGAAC 49 689 1936 Antisense
AAGATAATCAGCTCGTCAACCTTCA 377 155 1985 Antisense
ATCCATCCACAGTTCTCGATCATAA 669 39 2009 Antisense
GCGCCCTGAATGGCTACTTCAAATC 603 287 2103 Antisense
Sequence Source Affymetrix Proprietary Database