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[187183_s_at]

Description F59B10.4 /REP_DB=WormBase Gene ID /WP=CE01593 /TR=SW:Q09952 /GB=CAA88598.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_high_8_8 > 04      6grp_highest_nonorm > 91      6grp_total > 98      4grp_total > 05      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 810
1 2 3 4 range
A 416.2
(-0.9)
P 		146.9
(-2.9)
A 		137.5
(-3)
P 		947
(3)
P 		810
B 370.7
(-1.1)
P 		167.8
(-2.8)
P 		147
(-3)
P 		872.2
(3)
P 		725
C 424.2
(-0.5)
P 		208.8
(-2.4)
P 		136.8
(-3)
P 		813.7
(3)
P 		677
avr 403.7
(-0.9) 		174.5
(-2.7) 		140.4
(-3) 		877.6
(3) 		737

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 232.1
(-0.3)
P 		140.8
(-3)
P 		186.5
(-1.7)
P 		201.2
(-1.2)
P 		334.1
(2.7)
P 		344.1
(3)
P 		203
B 219.7
(-2.3)
P 		202.6
(-3)
P 		232.7
(-1.7)
P 		248.2
(-1.1)
P 		321.8
(2.1)
P 		343.2
(3)
P 		141
C 209.9
(-1.6)
P 		207.1
(-1.7)
P 		175.8
(-2.8)
P 		171
(-3)
P 		266.7
(0.4)
P 		339.3
(3)
P 		168
avr 220.6
(-1.6) 		183.5
(-3) 		198.3
(-2.4) 		206.8
(-2.1) 		307.5
(1.7) 		342.2
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 151.5
(3)
P 		31.9
(-3)
A 		35.9
(-2.8)
P 		138.6
(2.4)
P 		120
B 118.2
(0.3)
P 		41.5
(-2.7)
P 		34.1
(-3)
P 		185.9
(3)
P 		152
C 140.4
(3)
P 		60
(-2.2)
P 		47.7
(-3)
P 		137.2
(2.8)
P 		93
avr 136.7
(2.1) 		44.5
(-2.7) 		39.2
(-3) 		153.9
(3) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 42.8
(-2.8)
P 		50.1
(-2.1)
P 		40.6
(-3)
P 		51
(-2)
P 		100.8
(3)
P 		83.8
(1.3)
P 		60
B 76.4
(-1.4)
P 		67.4
(-2.1)
P 		56.5
(-3)
P 		65.7
(-2.3)
P 		130.8
(3)
P 		128
(2.8)
P 		74
C 77.8
(0.3)
P 		63.2
(-0.8)
P 		44.7
(-2.2)
P 		34.4
(-3)
P 		86.3
(0.9)
P 		113.6
(3)
P 		79
avr 65.7
(-1.2) 		60.2
(-1.7) 		47.3
(-3) 		50.4
(-2.7) 		106
(2.8) 		108.5
(3) 		61
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187183_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3191
Sequence Type Exemplar sequence
Representative Public ID F59B10.4 NCBI
Target Description F59B10.4 /REP_DB=WormBase Gene ID /WP=CE01593 /TR=SW:Q09952 /GB=CAA88598.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027048(11), NM_001027047(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027048 NCBI Caenorhabditis elegans F59B10.4b (F59B10.4) mRNA, complete cds. 11/11 None
NM_001027047 NCBI Caenorhabditis elegans F59B10.4a (F59B10.4) mRNA, complete cds. 11/11 None
SNAP00000006043 ENSEMBL cdna:SNAP chromosome:CEL140:II:10514028:10515492:-1 11/11 None
GENEFINDER00000006046 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10514028:10517255:-1 11/11 None
F59B10.4b ENSEMBL cdna:known chromosome:CEL140:II:10513753:10516337:-1 gene:F59B10.4 11/11 A 
F59B10.4a ENSEMBL cdna:known chromosome:CEL140:II:10514028:10519018:-1 gene:F59B10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10514024-10518986(-) 100.0 100.0
Public Domain and Genome References
Ensembl F59B10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88598 Hypothetical protein F59B10.4a [Caenorhabditis elegans] ref|NP_001022218.1| F59B10.4a [Caenorhabditis elegans] 1.0E-129
blast Q09952 Hypothetical protein F59B10.4 in chromosome II 1.0E-128
blast Q09952 Hypothetical protein F59B10.4 in chromosome II 1.0E-117
blast CAH04739 Hypothetical protein F59B10.4b [Caenorhabditis elegans] ref|NP_001022219.1| F59B10.4b [Caenorhabditis elegans] 1.0E-113
blast CAE59663 Hypothetical protein CBG03082 [Caenorhabditis briggsae] 1.0E-113
blast CAA88598 Hypothetical protein F59B10.4a [Caenorhabditis elegans] ref|NP_001022218.1| F59B10.4a [Caenorhabditis elegans] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022219.1 4 16-38,42-64,73-95,128-150
NP_001022218.1 4 42-64,68-90,99-121,154-176
F59B10.4b 4 16-38,42-64,73-95,128-150
F59B10.4a 4 42-64,68-90,99-121,154-176
SNAP00000006043 4 16-38,42-64,73-95,128-150
GENEFINDER00000006046 4 32-54,58-80,89-111,140-162
Sequence
Target Sequence 
>C. ELEGANS:187183_S_AT
cgacattgttcatcgtcaacttctcgctggtacttctcgcacttttaggcattaattcta
aagtgtcttcaatgatattgccggcgttagtgtggaaatgtgttctcctgttgttccttt
tgtttttgggatgtatttcggtggatgcgtatcaagttccagctactgatcttgaagaag
ctcatgtgtcacagccacaggaacaaccccaccgctcaatgatggtatggaaagatctgg
cggcaaaatatccgatgcttccgttcattgccgtagcttgcaccatcgttcttgcagtgg
aagcaaggtttgaaacagtgtttttctcggcatggcagaagatttgctgtccggcagtgg
tgaacgatgaatcaaatttggagaaatctcctccatcgtacaacgcttgtgtgcgtgcca
cagccagcgaaaaagatcttccgagctacgaagatgcgctgaaaaactcttcccaacaac
catcaacatcttcttcttcttcatcgccaccatcacgaccaccccattctgtatacacca
tacctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATTGTTCATCGTCAACTTCTC 180 253 224 Antisense
GTACTTCTCGCACTTTTAGGCATTA 98 461 253 Antisense
GGAAATGTGTTCTCCTGTTGTTCCT 404 527 317 Antisense
GGATGCGTATCAAGTTCCAGCTACT 279 513 366 Antisense
CAACCCCACCGCTCAATGATGGTAT 681 185 427 Antisense
AAAATATCCGATGCTTCCGTTCATT 690 133 468 Antisense
GCACCATCGTTCTTGCAGTGGAAGC 77 315 503 Antisense
GATTTGCTGTCCGGCAGTGGTGAAC 87 427 564 Antisense
GTACAACGCTTGTGTGCGTGCCACA 513 461 621 Antisense
GATGCGCTGAAAAACTCTTCCCAAC 697 413 676 Antisense
CCCCATTCTGTATACACCATACCTG 397 261 745 Antisense
Sequence Source Affymetrix Proprietary Database