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[187180_at]

Description C44C1.5 /REP_DB=WormBase Gene ID /WP=CE04215 /TR=SW:Q18610 /GB=AAA82365.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      6grp_highest_nonorm > 61      6grp_total > 31      4grp_total > 60      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 854
1 2 3 4 range
A 709.1
(2)
P 		596
(1.1)
P 		830.6
(3)
P 		73.1
(-3)
A 		758
B 819.2
(3)
P 		706.5
(2.1)
P 		816
(3)
P 		45.5
(-3)
A 		774
C 629.1
(1.1)
P 		660.9
(1.3)
P 		899.6
(3)
P 		58.7
(-3)
A 		841
avr 719.1
(2) 		654.5
(1.5) 		848.7
(3) 		59.1
(-3) 		790

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 501
1 2 3 4 5 6 range
A 338.2
(0.3)
P 		521.1
(3)
P 		512.9
(2.9)
P 		414
(1.4)
P 		245.4
(-1.1)
P 		120
(-3)
P 		401
B 397.8
(0.6)
P 		597.1
(3)
P 		514.2
(2)
P 		364.7
(0.2)
P 		308.5
(-0.5)
P 		95.7
(-3)
P 		501
C 405.6
(1.3)
P 		524.8
(3)
P 		489
(2.5)
P 		331
(0.2)
P 		239.2
(-1.1)
P 		107
(-3)
P 		418
avr 380.5
(0.7) 		547.7
(3) 		505.4
(2.4) 		369.9
(0.6) 		264.4
(-0.9) 		107.6
(-3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 258.2
(3)
P 		129.4
(-0.1)
P 		217.1
(2)
P 		10.7
(-3)
A 		248
B 261.2
(3)
P 		174.5
(0.9)
P 		189.1
(1.3)
P 		9.7
(-3)
A 		252
C 208.3
(0.9)
P 		190
(0.6)
P 		313.5
(3)
P 		9.9
(-3)
A 		304
avr 242.6
(3) 		164.6
(1) 		239.9
(2.9) 		10.1
(-3) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 170
1 2 3 4 5 6 range
A 62.3
(-1.7)
P 		185.3
(3)
P 		111.7
(0.2)
P 		105
(-0.1)
P 		74.1
(-1.3)
P 		29.2
(-3)
P 		156
B 138.4
(0.8)
P 		198.7
(3)
P 		124.9
(0.3)
P 		96.6
(-0.8)
P 		125.3
(0.3)
P 		35.7
(-3)
P 		163
C 150.4
(2.5)
P 		160.1
(3)
P 		124.5
(1.3)
P 		66.6
(-1.5)
P 		77.4
(-1)
P 		35.8
(-3)
P 		124
avr 117
(0.4) 		181.4
(3) 		120.4
(0.5) 		89.4
(-0.7) 		92.3
(-0.6) 		33.6
(-3) 		148
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187180_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18078
Sequence Type Exemplar sequence
Representative Public ID C44C1.5 NCBI
Target Description C44C1.5 /REP_DB=WormBase Gene ID /WP=CE04215 /TR=SW:Q18610 /GB=AAA82365.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029287 NCBI Caenorhabditis elegans C44C1.5a (C44C1.5) mRNA, complete cds. 11/11 None
SNAP00000015467 ENSEMBL cdna:SNAP chromosome:CEL140:X:975737:977999:-1 11/11 None
GENEFINDER00000015469 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:975737:977999:-1 11/11 None
C44C1.5a ENSEMBL cdna:known chromosome:CEL140:X:975523:977999:-1 gene:C44C1.5 11/11 None
C44C1.5b.2 ENSEMBL cdna:known chromosome:CEL140:X:975560:978005:-1 gene:C44C1.5 10/11 None
C44C1.5b.1 ENSEMBL cdna:known chromosome:CEL140:X:975560:978442:-1 gene:C44C1.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001029288 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180450 2 1 NM_001029287 187180_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:975736-977999(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44C1.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82365 Hypothetical protein C44C1.5a [Caenorhabditis elegans] ref|NP_001024458.1| C44C1.5a [Caenorhabditis elegans] sp|Q18610|YYC5_CAEEL Hypothetical UPF0017 protein C44C1.5 in chromosome X 0.0
blast CAE63589 Hypothetical protein CBG08080 [Caenorhabditis briggsae] 0.0
blast CAB60395 Hypothetical protein Y60A3A.7 [Caenorhabditis elegans] ref|NP_507863.1| Y60A3A.7 [Caenorhabditis elegans] 1.0E-178
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024458.1 1 2-24
C44C1.5a 1 2-24
C44C1.5b.2 1 2-24
C44C1.5b.1 1 2-24
SNAP00000015467 1 2-24
GENEFINDER00000015469 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:187180_AT
aagctgggatgcgggttttccatgggaggaatgattctctggaactatctagcgatgact
ggagaaaatgcagatctggacggaggcatgattgtttcttctccgtgggatccccttgtt
gcttctgattctattgaatgctttattccacaacttattttcaacagctttattgcaaag
aacttggtagatatggtgagaccgtaccgcgagctattcaaagatatggtggattttgac
gaagtgtgcagatgcaatacggttagagggtttgatcgatcttttgtgattcccatgtat
gggttcaagagttgcgatgactattacagacaggctactttggcgacaaaggtagacaaa
atcaagattccatgtgtaacactgaattctgttgatgattatttcagcccggtggaatgc
atccctacattagatataatggagagcgactacgtttgcggtattatcaccaatcacgga
ggacatactgctttcatggagtctgctgatccaaatgcgcgcggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCTGGGATGCGGGTTTTCCATGG 538 149 559 Antisense
GGACGGAGGCATGATTGTTTCTTCT 704 523 636 Antisense
CCCTTGTTGCTTCTGATTCTATTGA 386 259 671 Antisense
GATATGGTGAGACCGTACCGCGAGC 637 425 748 Antisense
GATCGATCTTTTGTGATTCCCATGT 402 417 832 Antisense
TACAGACAGGCTACTTTGGCGACAA 371 637 883 Antisense
TATTTCAGCCCGGTGGAATGCATCC 223 661 958 Antisense
GAGAGCGACTACGTTTGCGGTATTA 11 351 1000 Antisense
GCGGTATTATCACCAATCACGGAGG 99 291 1016 Antisense
GACATACTGCTTTCATGGAGTCTGC 608 369 1040 Antisense
TCTGCTGATCCAAATGCGCGCGGAA 223 609 1060 Antisense
Sequence Source Affymetrix Proprietary Database