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[187179_at]

Description ZK1320.5 /REP_DB=WormBase Gene ID /WP=CE01703 /TR=SW:Q09366 /GB=CAA87043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 36      6grp_total > 37      4grp_total > 20      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 110.4
(-0.4)
P 		106.1
(-0.6)
A 		52.9
(-3)
M 		184.5
(3)
P 		132
B 118.3
(2.1)
P 		107.4
(1.4)
P 		44.7
(-3)
M 		131
(3)
P 		86
C 114.7
(-0.3)
P 		61.3
(-3)
A 		65.4
(-2.8)
A 		178.6
(3)
P 		117
avr 114.5
(0.3) 		91.6
(-1) 		54.3
(-3) 		164.7
(3) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 136.6
(3)
P 		98.1
(0.5)
P 		98.8
(0.5)
P 		45.5
(-3)
A 		64.3
(-1.8)
P 		90.6
(-0)
P 		91
B 112.4
(3)
P 		74.4
(-0.5)
P 		85.5
(0.6)
P 		46.4
(-3)
A 		80.4
(0.1)
M 		89.5
(0.9)
P 		66
C 95.2
(1)
P 		117.9
(3)
P 		49
(-3)
M 		54.6
(-2.5)
P 		56.4
(-2.4)
P 		102.4
(1.7)
P 		69
avr 114.7
(3) 		96.8
(1.4) 		77.8
(-0.4) 		48.8
(-3) 		67
(-1.3) 		94.2
(1.1) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 40.2
(3)
P 		23
(-0.9)
A 		13.8
(-3)
M 		27
(-0)
P 		26
B 37.7
(3)
P 		26.5
(0.5)
P 		10.4
(-3)
M 		27.9
(0.8)
P 		27
C 38
(3)
P 		17.6
(-3)
A 		22.8
(-1.5)
A 		30.1
(0.7)
P 		20
avr 38.6
(3) 		22.4
(-1.2) 		15.7
(-3) 		28.3
(0.3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 25.2
(0.5)
P 		34.9
(3)
P 		21.5
(-0.4)
P 		11.5
(-3)
A 		19.4
(-1)
P 		22.1
(-0.3)
P 		23
B 39.1
(3)
P 		24.8
(-0.2)
P 		20.8
(-1.1)
P 		12.3
(-3)
A 		32.7
(1.6)
M 		33.4
(1.7)
P 		27
C 35.3
(2.8)
P 		36
(3)
P 		12.5
(-2.6)
M 		11
(-3)
P 		18.3
(-1.2)
P 		34.3
(2.6)
P 		25
avr 33.2
(3) 		31.9
(2.6) 		18.3
(-1.1) 		11.6
(-3) 		23.5
(0.3) 		29.9
(2.1) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187179_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2682
Sequence Type Exemplar sequence
Representative Public ID ZK1320.5 NCBI
Target Description ZK1320.5 /REP_DB=WormBase Gene ID /WP=CE01703 /TR=SW:Q09366 /GB=CAA87043.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063685 NCBI Caenorhabditis elegans ZK1320.5 (ZK1320.5) mRNA, complete cds. 11/11 None
SNAP00000038583 ENSEMBL cdna:SNAP chromosome:CEL140:II:9663527:9665575:-1 11/11 None
GENEFINDER00000038603 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9660826:9665575:-1 11/11 None
ZK1320.5 ENSEMBL cdna:known chromosome:CEL140:II:9663527:9665575:-1 gene:ZK1320.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9663523-9665572(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1320.5
Entrez Gene 191564 Entrez gene
SwissProt Q09366 EMBL-EBI
WormBase CE01703 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87043 Hypothetical protein ZK1320.5 [Caenorhabditis elegans] ref|NP_496086.1| ZK1320.5 [Caenorhabditis elegans] sp|Q09366|YS25_CAEEL Hypothetical protein ZK1320.5 in chromosome II 0.0
blast CAA87042 Hypothetical protein ZK1320.4 [Caenorhabditis elegans] ref|NP_496085.3| CYtochrome P450 family member (cyp-13A10) [Caenorhabditis elegans] sp|Q09653|C13AA_CAEEL Putative cytochrome P450 CYP13A10 0.0
blast T27750 hypothetical protein ZK1320.4 - Caenorhabditis elegans 0.0
blast CAE57997 Hypothetical protein CBG01060 [Caenorhabditis briggsae] 0.0
blast CAE57993 Hypothetical protein CBG01056 [Caenorhabditis briggsae] 1.0E-123
Protein Families
Method ID Description E-Value
p450 CP11_MESAU Animalia; CYP1A1; ham; CP11_MESAU; Hamster; Q00557 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.3E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496086.1 7 5-24,45-67,77-99,120-142,178-195,226-248,263-280
ZK1320.5 7 5-24,45-67,77-99,120-142,178-195,226-248,263-280
SNAP00000038583 7 5-24,45-67,77-99,120-142,178-195,226-248,263-280
GENEFINDER00000038603 8 5-24,45-67,77-99,120-142,178-195,226-248,263-280,406-423
Sequence
Target Sequence 
>C. ELEGANS:187179_AT
tcatgctgtacatcgcttgtttggccgacttcatcttgcatgtaattgtcaagagattta
taaatctagaagattccacgcttgatatgatgtacatcaatgctcgatgctttcttccaa
ttgtttacccattatcactaatcgctaacaacaaaaatctccgaatcgactatttcggaa
acttcattctctgtcgaaaagccagaaatctgcataaagagtccaaagtcaaggtcattg
caacacgagaatcacaagaatccatcattgccaacttgaaaatgatcggaattctcagtg
acgtggatacctctcagggtggcgctggtgctgcaagcctcgcaatgatgggaatgggcg
gaggaggtgctccaagacctcccagtggaggtcgaatggcttctatatccaaagatccta
attcaattacgtcttccggaagtctagctaagcaaagtacagcttcaatgggcagtggtg
gagcttcgggtatgatgatgttccacacgaggcctaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATGCTGTACATCGCTTGTTTGGC 109 623 707 Antisense
GGCCGACTTCATCTTGCATGTAATT 284 543 729 Antisense
GATGCTTTCTTCCAATTGTTTACCC 127 413 812 Antisense
GTTTACCCATTATCACTAATCGCTA 22 449 829 Antisense
ATTTCGGAAACTTCATTCTCTGTCG 666 15 878 Antisense
ATTCTCAGTGACGTGGATACCTCTC 649 9 997 Antisense
GGAGGAGGTGCTCCAAGACCTCCCA 81 517 1066 Antisense
GGAGGTCGAATGGCTTCTATATCCA 675 515 1093 Antisense
GTACAGCTTCAATGGGCAGTGGTGG 281 461 1163 Antisense
GCAGTGGTGGAGCTTCGGGTATGAT 544 311 1178 Antisense
ATGATGTTCCACACGAGGCCTAAAA 264 45 1201 Antisense
Sequence Source Affymetrix Proprietary Database