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[187178_s_at]

Description D2024.7 /REP_DB=WormBase Gene ID /WP=CE04296 /TR=SW:Q18973 /GB=AAA82289.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 89      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 96      6grp_total > 98      4grp_total > 12      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1046
1 2 3 4 range
A 572.8
(-0.9)
P 		372
(-2.3)
P 		264.8
(-3)
P 		1142.5
(3)
P 		878
B 581.5
(-1.3)
P 		340
(-2.7)
P 		293.7
(-3)
P 		1295.3
(3)
P 		1002
C 542.9
(-1.1)
P 		392.5
(-2.1)
P 		249
(-3)
P 		1174.4
(3)
P 		925
avr 565.7
(-1.1) 		368.2
(-2.4) 		269.2
(-3) 		1204.1
(3) 		935

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 800
1 2 3 4 5 6 range
A 949.7
(0.5)
P 		574.3
(-3)
P 		579
(-3)
P 		885.7
(-0.1)
P 		1000.9
(0.9)
P 		1226.9
(3)
P 		653
B 782.8
(-1)
P 		553.5
(-3)
P 		748.3
(-1.3)
P 		737.6
(-1.4)
P 		1197.5
(2.7)
P 		1232
(3)
P 		679
C 898.4
(-0.3)
P 		541.7
(-3)
P 		732.4
(-1.6)
P 		831.2
(-0.8)
P 		1015.6
(0.6)
P 		1341.6
(3)
P 		800
avr 877
(-0.3) 		556.5
(-3) 		686.6
(-1.9) 		818.2
(-0.8) 		1071.3
(1.3) 		1266.8
(3) 		710
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 208
1 2 3 4 range
A 208.5
(3)
P 		80.7
(-2.5)
P 		69.2
(-3)
P 		167.2
(1.2)
P 		139
B 185.4
(0.4)
P 		84
(-2.5)
P 		68
(-3)
P 		276
(3)
P 		208
C 179.7
(2)
P 		112.9
(-1.6)
P 		86.8
(-3)
P 		198
(3)
P 		111
avr 191.2
(2) 		92.5
(-2.2) 		74.7
(-3) 		213.7
(3) 		139

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 175.1
(-1.3)
P 		204.2
(-0.3)
P 		126.1
(-3)
P 		224.6
(0.4)
P 		302
(3)
P 		298.7
(2.9)
P 		176
B 272.4
(-1.2)
P 		184.2
(-3)
P 		181.7
(-3)
P 		195.4
(-2.7)
P 		486.5
(3)
P 		459.4
(2.5)
P 		305
C 333
(0.5)
P 		165.3
(-3)
P 		186.4
(-2.6)
P 		167.1
(-3)
P 		328.6
(0.5)
P 		449.1
(3)
P 		284
avr 260.2
(-0.6) 		184.6
(-2.5) 		164.7
(-3) 		195.7
(-2.2) 		372.4
(2.2) 		402.4
(3) 		238
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187178_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9684
Sequence Type Exemplar sequence
Representative Public ID D2024.7 NCBI
Target Description D2024.7 /REP_DB=WormBase Gene ID /WP=CE04296 /TR=SW:Q18973 /GB=AAA82289.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068747(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068747 NCBI Caenorhabditis elegans D2024.7 (D2024.7) mRNA, complete cds. 11/11 None
SNAP00000033327 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7240494:7242239:-1 11/11 None
GENEFINDER00000033340 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7240494:7242239:-1 11/11 None
D2024.7 ENSEMBL cdna:known chromosome:CEL140:IV:7240428:7242254:-1 gene:D2024.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7240499-7242245(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2024.7
Entrez Gene 177498 Entrez gene
SwissProt Q18973 EMBL-EBI
WormBase CE04296 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
30288 periplasmic space (sensu Gram-negative Bacteria) inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
15035 protein disulfide oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_501148 D2024.7 [Caenorhabditis elegans] gb|AAA82289.1| Hypothetical protein D2024.7 [Caenorhabditis elegans] sp|Q18973|YYS7_CAEEL Hypothetical protein D2024.7 in chromosome IV 1.0E-130
blast CAE61842 Hypothetical protein CBG05816 [Caenorhabditis briggsae] 1.0E-123
blast AAI06345 Unknown (protein for MGC:130886) [Xenopus laevis] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR001853 EMBL-EBI DSBA oxidoreductase 2.7E-79
Sequence
Target Sequence 
>C. ELEGANS:187178_S_AT
aaggaatcactcgtcatcgttccgtttggaagactccaattcagatgaaaccattctttt
ttgctggtgttgtcagacatactgaaaaccccggtctcccactccgtattcctatcaaag
aaaagtacatgcacaaagatttgctcttctctgcccaatattggggaattccgttccgtc
ttcccaaggactacacaaatatgatgttgaacacaagttcaatcgttccacaacgtattc
ttgtcgcttcacaactccgtgataatgttttgatggaagacgttgctcgtggactctggc
atcgattttatgcatacggaaaaccaattttcacaaaaagtcaagttgccgaagttttga
gagatttgcatgtaaaagatgtcgatgagttggtgatgatgagtgattcggcagaagtta
agaacattttaagagaaaacacagatgaagccatcgggaatggatgtttcggagctccgt
ggatgcatatcactgatggtcacggaaaagtacttcaaacagttttcggatcggatcgcc
ttccacaggtggccgattttcttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAATCACTCGTCATCGTTCCGT 546 161 80 Antisense
CCCACTCCGTATTCCTATCAAAGAA 244 259 177 Antisense
CACAAAGATTTGCTCTTCTCTGCCC 270 195 211 Antisense
TTCCGTCTTCCCAAGGACTACACAA 691 697 253 Antisense
AACACAAGTTCAATCGTTCCACAAC 631 135 289 Antisense
GTTCCACAACGTATTCTTGTCGCTT 170 441 304 Antisense
TTGTCGCTTCACAACTCCGTGATAA 322 707 320 Antisense
TGGAAGACGTTGCTCGTGGACTCTG 296 541 353 Antisense
GGAGCTCCGTGGATGCATATCACTG 644 521 550 Antisense
ACAGTTTTCGGATCGGATCGCCTTC 345 91 598 Antisense
TTCCACAGGTGGCCGATTTTCTTGC 54 701 620 Antisense
Sequence Source Affymetrix Proprietary Database