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[187177_at]

Description C13G5.2 /REP_DB=WormBase Gene ID /WP=CE00071 /TR=SW:P34327 /GB=AAB37563.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 01      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 123.3
(-3)
P 		149.4
(-2.1)
P 		152.8
(-2)
P 		306.1
(3)
P 		183
B 136.2
(-2.9)
P 		133.8
(-3)
P 		167
(-1.7)
P 		288.6
(3)
P 		155
C 160.9
(-2)
P 		124.6
(-3)
P 		152
(-2.3)
P 		352.3
(3)
P 		228
avr 140.1
(-2.9) 		135.9
(-3) 		157.3
(-2.3) 		315.7
(3) 		180

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 498
1 2 3 4 5 6 range
A 114.1
(-3)
P 		178.9
(-2)
P 		264.6
(-0.6)
P 		362.6
(1)
P 		320.6
(0.3)
P 		488.5
(3)
P 		374
B 125.6
(-3)
P 		133.1
(-2.9)
P 		208.3
(-2)
P 		284.6
(-1)
P 		606.4
(3)
P 		574
(2.6)
P 		481
C 108.3
(-3)
P 		156.1
(-2.4)
P 		213.7
(-1.7)
P 		333.6
(-0.3)
P 		401.5
(0.5)
P 		604.9
(3)
P 		497
avr 116
(-3) 		156
(-2.5) 		228.9
(-1.5) 		326.9
(-0.1) 		442.8
(1.5) 		555.8
(3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 44.9
(3)
P 		32.4
(-3)
P 		39.9
(0.6)
P 		44.8
(3)
P 		13
B 43.4
(-0.8)
P 		33
(-3)
P 		38.7
(-1.8)
P 		61.5
(3)
P 		29
C 53.3
(1.4)
P 		35.8
(-3)
P 		53
(1.4)
P 		59.4
(3)
P 		24
avr 47.2
(0.8) 		33.7
(-3) 		43.9
(-0.2) 		55.2
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 21
(-3)
P 		63.6
(-0.4)
P 		57.6
(-0.8)
P 		92
(1.4)
P 		96.8
(1.6)
P 		118.9
(3)
P 		98
B 43.7
(-3)
P 		44.3
(-3)
P 		50.6
(-2.8)
P 		75.4
(-2.1)
P 		246.4
(3)
P 		214
(2)
P 		203
C 40.2
(-3)
P 		47.6
(-2.7)
P 		54.4
(-2.5)
P 		67.1
(-2)
P 		129.9
(0.3)
P 		202.5
(3)
P 		162
avr 35
(-3) 		51.8
(-2.3) 		54.2
(-2.2) 		78.2
(-1.2) 		157.7
(2.1) 		178.5
(3) 		144
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187177_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7834
Sequence Type Exemplar sequence
Representative Public ID C13G5.2 NCBI
Target Description C13G5.2 /REP_DB=WormBase Gene ID /WP=CE00071 /TR=SW:P34327 /GB=AAB37563.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066496 NCBI Caenorhabditis elegans C13G5.2 (C13G5.2) mRNA, complete cds. 11/11 A 
SNAP00000030083 ENSEMBL cdna:SNAP chromosome:CEL140:III:8616771:8618341:-1 11/11 None
GENEFINDER00000030088 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8616771:8618341:-1 11/11 None
C13G5.2 ENSEMBL cdna:known chromosome:CEL140:III:8616747:8618342:-1 gene:C13G5.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8616772-8618336(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C13G5.2
Entrez Gene 176208 Entrez gene
SwissProt P34327 EMBL-EBI
WormBase CE29086 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37563 Hypothetical protein C13G5.2 [Caenorhabditis elegans] ref|NP_498897.1| C13G5.2 [Caenorhabditis elegans] sp|P34327|YKX2_CAEEL Hypothetical protein C13G5.2 in chromosome III 1.0E-147
blast AAK68682 Hypothetical protein C03B1.14 [Caenorhabditis elegans] ref|NP_509067.1| C03B1.14 [Caenorhabditis elegans] 8.0E-57
blast CAE69278 Hypothetical protein CBG15332 [Caenorhabditis briggsae] 7.0E-36
Sequence
Target Sequence 
>C. ELEGANS:187177_AT
gatcagtacagtcggacggtcatcaaatattctaaacatcttcgacaaaacgaacaaatc
gagccttggaaatccgagatggtggatccgattcgaccgacctcatggaaatgttgattt
ccatcacattaacatcaacaaagcagtgactggactgaaggatcctcatattccactcac
accgactactgccaaaactattggagtgcttggaaaagttgcagaaaaagcaaatgatgt
cgcgccactgctcacgacagcggcaatgatctacgaagcctaccgagttggacaagaagt
ccacaaggatatgaatcatgggacgacaagaaatacaatcaaaacattggctgcgacgag
tggaacttattccagtggatccattggagcttatgctggaagtgtgattggaacatcaat
ttttcccggattag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAGTACAGTCGGACGGTCATCA 281 419 378 Antisense
GAGATGGTGGATCCGATTCGACCGA 50 397 453 Antisense
GATTCGACCGACCTCATGGAAATGT 481 433 467 Antisense
GTGACTGGACTGAAGGATCCTCATA 399 483 523 Antisense
CACACCGACTACTGCCAAAACTATT 455 143 555 Antisense
AAGCAAATGATGTCGCGCCACTGCT 411 149 605 Antisense
GCTCACGACAGCGGCAATGATCTAC 355 301 627 Antisense
GATCTACGAAGCCTACCGAGTTGGA 81 415 645 Antisense
GGCTGCGACGAGTGGAACTTATTCC 657 497 726 Antisense
GTGGATCCATTGGAGCTTATGCTGG 298 489 752 Antisense
GGAACATCAATTTTTCCCGGATTAG 421 525 787 Antisense
Sequence Source Affymetrix Proprietary Database