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[187176_s_at]

Description D2096.6 /REP_DB=WormBase Gene ID /WP=CE04304 /TR=SW:Q19005 /GB=AAA81492.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      6grp_highest_nonorm > 84      6grp_total > 38      4grp_total > 49      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2216
1 2 3 4 range
A 108.2
(-2.8)
A 		1911.4
(3)
P 		1868.3
(2.9)
P 		40.8
(-3)
A 		1871
B 95.4
(-3)
A 		2256.3
(3)
P 		1975.6
(2.2)
P 		115.3
(-2.9)
A 		2161
C 119.2
(-3)
A 		2052.5
(3)
P 		1844.7
(2.4)
P 		164.8
(-2.9)
A 		1933
avr 107.6
(-3) 		2073.4
(3) 		1896.2
(2.5) 		107
(-3) 		1966

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 597
1 2 3 4 5 6 range
A 656.8
(-1)
P 		955.1
(2.2)
P 		463.7
(-3)
P 		522.6
(-2.4)
P 		622.8
(-1.3)
P 		1033.7
(3)
P 		570
B 736.8
(1.7)
P 		817.8
(3)
P 		436.8
(-3)
P 		469.9
(-2.5)
P 		677.6
(0.8)
P 		734.1
(1.7)
P 		381
C 737.1
(2.4)
P 		763.4
(3)
P 		521.9
(-2.3)
P 		491.7
(-3)
P 		654
(0.6)
P 		704.5
(1.7)
P 		272
avr 710.2
(0.8) 		845.4
(3) 		474.1
(-3) 		494.7
(-2.7) 		651.5
(-0.1) 		824.1
(2.7) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 637
1 2 3 4 range
A 39.4
(-2.6)
A 		414.9
(2.1)
P 		488.4
(3)
P 		6
(-3)
A 		482
B 30.4
(-2.9)
A 		557.3
(3)
P 		457.8
(1.9)
P 		24.6
(-3)
A 		533
C 39.5
(-2.9)
A 		590.1
(2.5)
P 		642.9
(3)
P 		27.8
(-3)
A 		615
avr 36.4
(-2.8) 		520.8
(2.9) 		529.7
(3) 		19.5
(-3) 		510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 121.1
(-2.5)
P 		339.7
(3)
P 		101
(-3)
P 		132.5
(-2.2)
P 		187.9
(-0.8)
P 		251.7
(0.8)
P 		239
B 256.4
(2.3)
P 		272.2
(2.9)
P 		106.1
(-3)
P 		124.5
(-2.3)
P 		275.3
(3)
P 		273.7
(2.9)
P 		169
C 273.2
(3)
P 		232.9
(1.6)
P 		132.8
(-1.8)
P 		98.9
(-3)
P 		211.6
(0.9)
P 		235.8
(1.7)
P 		174
avr 216.9
(0.7) 		281.6
(3) 		113.3
(-3) 		118.6
(-2.8) 		224.9
(1) 		253.7
(2) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187176_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8468
Sequence Type Exemplar sequence
Representative Public ID D2096.6 NCBI
Target Description D2096.6 /REP_DB=WormBase Gene ID /WP=CE04304 /TR=SW:Q19005 /GB=AAA81492.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069019(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069019 NCBI Caenorhabditis elegans D2096.6 (D2096.6) mRNA, complete cds. 11/11 None
SNAP00000025671 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8368502:8369204:-1 11/11 None
GENEFINDER00000025692 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8368502:8369204:-1 11/11 None
D2096.6 ENSEMBL cdna:known chromosome:CEL140:IV:8368325:8369204:-1 gene:D2096.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8368507-8369210(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2096.6
Entrez Gene 177633 Entrez gene
SwissProt Q19005 EMBL-EBI
WormBase CE04304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501420 D2096.6 [Caenorhabditis elegans] gb|AAA81492.1| Hypothetical protein D2096.6 [Caenorhabditis elegans] sp|Q19005|YYT6_CAEEL Hypothetical protein D2096.6 in chromosome IV 1.0E-84
blast CAE73746 Hypothetical protein CBG21276 [Caenorhabditis briggsae] 1.0E-73
blast AAC46730 Hypothetical protein T25E4.1 [Caenorhabditis elegans] ref|NP_495080.1| T25E4.1 [Caenorhabditis elegans] sp|Q10014|YR01_CAEEL Hypothetical protein T25E4.1 in chromosome II precursor 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:187176_S_AT
tcgctttgaccactgctcaagaggaggtctctggcaaagtttcttccacgaaacgccgtc
aatacgtggctgctcagcaaccagcagttccggttgttgcaccagtcggacaatgtccag
gaggcccatcgctcccaattgagtgcgatccaaagcgtccatggccacaatgtccaccac
aatcctattgttatgccaccaactccgtcgatattggaccatatttctgctgcccagtct
ggtcaacatacggagctgcctggcgtccggccactccattctacaactacgttccaccag
ttccagccaactggccagatgttgctaagatgaccgccaactggccagctgctgctgtca
gcgttccagtcaaagcccgcaagccaacaaaatccgatgatgaggaagaagaagtcggaa
aaatgggtggaatctcctcctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCTTTGACCACTGCTCAAGAGGA 11 599 53 Antisense
GGTCTCTGGCAAAGTTTCTTCCACG 142 503 78 Antisense
AAACGCCGTCAATACGTGGCTGCTC 518 123 103 Antisense
GTTGCACCAGTCGGACAATGTCCAG 483 439 148 Antisense
TTGAGTGCGATCCAAAGCGTCCATG 523 703 191 Antisense
AATCCTATTGTTATGCCACCAACTC 426 167 233 Antisense
GCCACCAACTCCGTCGATATTGGAC 141 281 247 Antisense
GCCCAGTCTGGTCAACATACGGAGC 56 287 284 Antisense
TAAGATGACCGCCAACTGGCCAGCT 9 637 378 Antisense
TGCTGTCAGCGTTCCAGTCAAAGCC 364 583 405 Antisense
AAAATGGGTGGAATCTCCTCCTCAA 105 133 472 Antisense
Sequence Source Affymetrix Proprietary Database