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[187175_s_at]

Description Y110A7A.17 /REP_DB=WormBase Gene ID /WP=CE23241 /TR=Q9N593 /GB=AAF60415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 97      6grp_total > 77      4grp_total > 10      6grp_highest_sub > In      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 571
1 2 3 4 range
A 679
(-3)
P 		753.4
(-1.7)
P 		898.1
(0.9)
P 		1012.8
(3)
P 		334
B 834.2
(-2.4)
P 		787.8
(-3)
P 		862.3
(-2)
P 		1250.2
(3)
P 		462
C 847.3
(-0.7)
P 		948.6
(0.7)
P 		679.8
(-3)
P 		1116.5
(3)
P 		437
avr 786.8
(-3) 		829.9
(-2.2) 		813.4
(-2.5) 		1126.5
(3) 		340

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 904
1 2 3 4 5 6 range
A 843.7
(-2.6)
P 		868.2
(-2.5)
P 		790.4
(-3)
P 		909.7
(-2.2)
P 		1261.6
(0.1)
P 		1694.5
(3)
P 		904
B 866.1
(-3)
P 		884
(-2.8)
P 		1146.8
(-0.1)
P 		1112
(-0.5)
P 		873
(-2.9)
P 		1449.9
(3)
P 		584
C 800.2
(-3)
P 		978.9
(-1.1)
P 		898.5
(-1.9)
P 		981.8
(-1)
P 		1119.8
(0.4)
P 		1357.9
(3)
P 		558
avr 836.7
(-3) 		910.4
(-2.3) 		945.2
(-2) 		1001.2
(-1.5) 		1084.8
(-0.8) 		1500.8
(3) 		664
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 247.2
(3)
P 		163.5
(-2.1)
P 		234.8
(2.2)
P 		148.3
(-3)
P 		99
B 266
(3)
P 		194.6
(-3)
P 		199.8
(-2.6)
P 		266.4
(3)
P 		72
C 280.5
(3)
P 		272.7
(2.5)
P 		236.9
(0.2)
P 		188.3
(-3)
P 		92
avr 264.6
(3) 		210.3
(-2.1) 		223.8
(-0.8) 		201
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 155.5
(-3)
P 		308.8
(0.6)
P 		172.1
(-2.6)
P 		230.7
(-1.2)
P 		380.7
(2.3)
P 		412.6
(3)
P 		257
B 301.4
(-2.5)
P 		294.2
(-2.6)
P 		278.5
(-3)
P 		294.5
(-2.6)
P 		354.7
(-1.3)
P 		540.7
(3)
P 		262
C 296.6
(-0.7)
P 		298.7
(-0.6)
P 		228.7
(-2.3)
P 		197.4
(-3)
P 		362.3
(0.8)
P 		454.6
(3)
P 		257
avr 251.2
(-2.4) 		300.6
(-1.2) 		226.4
(-3) 		240.9
(-2.6) 		365.9
(0.4) 		469.3
(3) 		243
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187175_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1863
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.17 NCBI
Target Description Y110A7A.17 /REP_DB=WormBase Gene ID /WP=CE23241 /TR=Q9N593 /GB=AAF60415.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026543(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026543 NCBI Caenorhabditis elegans Metaphase-to-Anaphase Transition defect family member (mat-1) (mat-1) mRNA, complete cds. 11/11 None
SNAP00000029209 ENSEMBL cdna:SNAP chromosome:CEL140:I:5124195:5127190:-1 11/11 None
GENEFINDER00000029227 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5124195:5127190:-1 11/11 None
Y110A7A.17a ENSEMBL cdna:known chromosome:CEL140:I:5123919:5127202:-1 gene:Y110A7A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172145 2 1 NM_001026543 187175_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5124194-5127190(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y110A7A.17
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60415 Metaphase-to-anaphase transition defect protein 1, isoform a [Caenorhabditis elegans] ref|NP_001021714.1| Metaphase-to-Anaphase Transition defect family member (mat-1) [Caenorhabditis elegans] 0.0
blast AAL92523 MAT-1 [Caenorhabditis elegans] 0.0
blast CAE65742 Hypothetical protein CBG10827 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 9.2E-5
Pfam IPR001440 EMBL-EBI TPR repeat 4.1E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.14
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 9.2E-5
Pfam IPR001440 EMBL-EBI TPR repeat 4.1E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.14
Sequence
Target Sequence 
>C. ELEGANS:187175_S_AT
tcgcctacgcatacactttattggggcatgagcttatcgttcaggatgaacttgacaaag
ctgcgggatctttcagatcagcacttctcctttctcctcgcgattaccgtgcctggtatg
gtctcgggttggttcacctaaagaaagagcaaaatctgactgcactgaccaatatccaga
aggctgttaatattaatccaacgaatcgtgcaatgctctgcacactgtcccaaatcgagc
aacaacgtggacaaatcgatactgctctcgtgctgattgacagggctctcactctgaatc
ctcttgatgtggcttgccgtttcaatagatcacgtctcttgtttgaggcgaatcgaaatg
aagaatgtctagtggaacttgataaattgaaagctagttcgccagatgaagcattcattt
tccatctgcttgcacgagttcaccgaagaatgggaaatactcatttggctcttcttaatt
atagctgggcggctgagctggatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGCCTACGCATACACTTTATTGGG 424 599 1793 Antisense
GGATCTTTCAGATCAGCACTTCTCC 147 513 1858 Antisense
GATTACCGTGCCTGGTATGGTCTCG 214 423 1894 Antisense
TATGGTCTCGGGTTGGTTCACCTAA 564 651 1909 Antisense
ATCTGACTGCACTGACCAATATCCA 238 33 1946 Antisense
TGCACACTGTCCCAAATCGAGCAAC 408 577 2011 Antisense
AAATCGATACTGCTCTCGTGCTGAT 243 119 2045 Antisense
ATTGACAGGGCTCTCACTCTGAATC 345 5 2068 Antisense
CTGAATCCTCTTGATGTGGCTTGCC 122 239 2086 Antisense
TTTCCATCTGCTTGCACGAGTTCAC 627 667 2211 Antisense
ATAGCTGGGCGGCTGAGCTGGATCC 469 21 2273 Antisense
Sequence Source Affymetrix Proprietary Database