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[187172_at]

Description F02A9.1B /REP_DB=WormBase Gene ID /WP=CE00132 /TR=SW:P34381 /GB=CAA79615.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 03      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 202
1 2 3 4 range
A 113.4
(-0.5)
A 		35.5
(-3)
A 		89
(-1.3)
A 		221
(3)
P 		186
B 83.5
(-2.5)
A 		98.7
(-2)
A 		70.5
(-3)
A 		237.9
(3)
P 		167
C 67.4
(-3)
A 		99.7
(-0.9)
A 		68.4
(-2.9)
A 		160.6
(3)
P 		93
avr 88.1
(-2.4) 		78
(-2.9) 		76
(-3) 		206.5
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 127.4
(3)
A 		87.5
(-3)
A 		127.5
(3)
A 		104
(-0.5)
A 		87.2
(-3)
A 		121.8
(2.2)
A 		40
B 134.9
(0.6)
A 		174.5
(3)
M 		128.9
(0.2)
A 		75.4
(-3)
A 		122.4
(-0.2)
A 		90.3
(-2.1)
A 		99
C 128.3
(0.7)
A 		118
(0.1)
A 		112
(-0.2)
A 		166.7
(3)
A 		102.4
(-0.8)
A 		65.3
(-3)
A 		101
avr 130.2
(3) 		126.7
(2.4) 		122.8
(1.8) 		115.4
(0.6) 		104
(-1.2) 		92.5
(-3) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 41.3
(3)
A 		7.7
(-3)
A 		23.3
(-0.2)
A 		32.3
(1.4)
P 		34
B 26.6
(-1.2)
A 		24.4
(-1.6)
A 		16.3
(-3)
A 		50.7
(3)
P 		34
C 22.3
(-3)
A 		28.7
(3)
A 		23.8
(-1.6)
A 		27.1
(1.5)
P 		6
avr 30.1
(0.6) 		20.3
(-3) 		21.1
(-2.7) 		36.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 23.5
(-3)
A 		31.1
(3)
A 		27.8
(0.4)
A 		26.4
(-0.7)
A 		26.3
(-0.8)
A 		29.7
(1.9)
A 		8
B 46.9
(1.2)
A 		58.1
(3)
M 		31.3
(-1.2)
A 		20
(-3)
A 		49.7
(1.7)
A 		33.7
(-0.8)
A 		38
C 47.6
(3)
A 		36
(0.3)
A 		28.5
(-1.5)
A 		33.5
(-0.3)
A 		33.1
(-0.4)
A 		21.9
(-3)
A 		26
avr 39.3
(2) 		41.7
(3) 		29.2
(-2) 		26.6
(-3) 		36.4
(0.9) 		28.4
(-2.3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187172_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6064
Sequence Type Exemplar sequence
Representative Public ID F02A9.1B NCBI
Target Description F02A9.1B /REP_DB=WormBase Gene ID /WP=CE00132 /TR=SW:P34381 /GB=CAA79615.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026072(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026072 NCBI Caenorhabditis elegans F02A9.7 (F02A9.7) mRNA, complete cds. 10/11 None
F02A9.1b ENSEMBL cdna:known chromosome:CEL140:III:9074861:9077705:-1 gene:F02A9.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000002181 7/11 Cross Hyb Matching Probes None
GENEFINDER00000002190 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9074856-9077701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F02A9.1
Entrez Gene 3564852 Entrez gene
WormBase CE38698 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast P34381 Hypothetical protein F02A9.1b in chromosome III 0.0
blast P34381 Hypothetical protein F02A9.1b in chromosome III 1.0E-101
blast CAJ15163 Hypothetical protein F02A9.7 [Caenorhabditis elegans] ref|NP_001021243.1| F02A9.7 [Caenorhabditis elegans] 1.0E-101
blast CAJ15163 Hypothetical protein F02A9.7 [Caenorhabditis elegans] ref|NP_001021243.1| F02A9.7 [Caenorhabditis elegans] 1.0E-100
blast CAA79614 Hypothetical protein F02A9.1 [Caenorhabditis elegans] ref|NP_001021242.1| F02A9.1 [Caenorhabditis elegans] sp|P34380|YLPA_CAEEL Hypothetical protein F02A9.1a in chromosome III 3.0E-72
blast CAE62674 Hypothetical protein CBG06815 [Caenorhabditis briggsae] 3.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021243.1 2 4-23,127-149
F02A9.1b 2 137-159,264-286
Sequence
Target Sequence 
>C. ELEGANS:187172_AT
gccaaccgcacctcatgattgtgcttatattgatcttcactctacctaccgtaatctcgc
aatttcatttatttattgtcatcaattgtgactcttactgccacgtaacattccgtgaca
atgaaatgcaatactacagtatcatggagaacactgcacagatttcaagacattttgatg
ttccagtggaaagagtcgagtttcaaattgataatttcttcaattccactgattttatgc
cggtgacaacgaatctggattgggttagtcatcttaataagaccttttatcacaaaggag
atggattcatgattattggacactatttctgcccagaaggaagctgtctcgtcgaccaca
cccgttccgaatacaatcaaaaaatcgataaatggtgctgtgctcttgttctacttggtt
tcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCAACCGCACCTCATGATTGTGCT 63 279 410 Antisense
TATATTGATCTTCACTCTACCTACC 134 661 435 Antisense
CTACCGTAATCTCGCAATTTCATTT 218 225 455 Antisense
GACTCTTACTGCCACGTAACATTCC 333 371 499 Antisense
TCAATTCCACTGATTTTATGCCGGT 209 633 629 Antisense
TATGCCGGTGACAACGAATCTGGAT 344 657 645 Antisense
TATTGGACACTATTTCTGCCCAGAA 285 665 723 Antisense
CAGAAGGAAGCTGTCTCGTCGACCA 69 203 743 Antisense
CACACCCGTTCCGAATACAATCAAA 542 193 766 Antisense
TAAATGGTGCTGTGCTCTTGTTCTA 436 641 798 Antisense
GCTCTTGTTCTACTTGGTTTCTTAT 414 301 811 Antisense
Sequence Source Affymetrix Proprietary Database