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[187170_at]

Description F59B2.12 /REP_DB=WormBase Gene ID /WP=CE01024 /TR=SW:P34487 /GB=CAA77581.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 07      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.3
(-0.9)
A 		4
(1.6)
A 		2.7
(-3)
A 		4.4
(3)
A 		2
B 3.3
(-1.4)
A 		2.5
(-3)
A 		5.5
(3)
A 		2.7
(-2.6)
A 		3
C 4.8
(3)
A 		1.8
(-3)
A 		4
(1.4)
A 		3.6
(0.6)
A 		3
avr 3.8
(1.6) 		2.8
(-3) 		4.1
(3) 		3.6
(0.7) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 6.1
(3)
A 		2
(-2.5)
A 		1.7
(-2.9)
A 		4.5
(0.9)
A 		3.1
(-1)
A 		1.6
(-3)
A 		5
B 2.9
(-0.5)
A 		3.3
(0.9)
A 		3.9
(3)
A 		2.4
(-2.3)
A 		2.2
(-3)
A 		2.3
(-2.6)
A 		2
C 4.1
(1.3)
A 		5
(3)
A 		3.9
(0.9)
A 		4
(1.1)
A 		2.3
(-2.2)
A 		1.9
(-3)
A 		3
avr 4.4
(3) 		3.4
(0.6) 		3.2
(0.1) 		3.6
(1.1) 		2.5
(-1.6) 		1.9
(-3) 		3
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1.2
(3)
A 		0.9
(0)
A 		0.7
(-2)
A 		0.6
(-3)
A 		1
B 1.1
(1.3)
A 		0.6
(-3)
A 		1.3
(3)
A 		0.6
(-3)
A 		1
C 1.6
(3)
A 		0.5
(-3)
A 		1.4
(1.9)
A 		0.6
(-2.5)
A 		1
avr 1.3
(3) 		0.7
(-2.1) 		1.1
(1.3) 		0.6
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.1
(3)
A 		0.7
(-0.4)
A 		0.4
(-3)
A 		1.1
(3)
A 		0.9
(1.3)
A 		0.4
(-3)
A 		1
B 1
(1.8)
A 		1.1
(3)
A 		0.9
(0.6)
A 		0.6
(-3)
A 		0.9
(0.6)
A 		0.8
(-0.6)
A 		1
C 1.5
(3)
A 		1.5
(3)
A 		1
(-0.3)
A 		0.8
(-1.7)
A 		0.8
(-1.7)
A 		0.6
(-3)
A 		1
avr 1.2
(3) 		1.1
(2) 		0.8
(-1) 		0.8
(-1) 		0.9
(0) 		0.6
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7072
Sequence Type Exemplar sequence
Representative Public ID F59B2.12 NCBI
Target Description F59B2.12 /REP_DB=WormBase Gene ID /WP=CE01024 /TR=SW:P34487 /GB=CAA77581.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066597(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066597 NCBI Caenorhabditis elegans F59B2.12 (F59B2.12) mRNA, complete cds. 11/11 None
GENEFINDER00000012584 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9012909:9020759:1 11/11 None
SNAP00000012580 ENSEMBL cdna:SNAP chromosome:CEL140:III:9017513:9020759:1 11/11 None
F59B2.12 ENSEMBL cdna:known chromosome:CEL140:III:9017513:9020866:1 gene:F59B2.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9017508-9020755(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B2.12
Entrez Gene 176276 Entrez gene
SwissProt P34487 EMBL-EBI
WormBase CE01024 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA77581 Hypothetical protein F59B2.12 [Caenorhabditis elegans] ref|NP_498998.1| F59B2.12 [Caenorhabditis elegans] sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chromosome III 0.0
blast S31132 hypothetical protein F59B2.12 - Caenorhabditis elegans 0.0
blast CAE62718 Hypothetical protein CBG06873 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187170_AT
gatgtccgacaaaatgctttcgcaaatgttgatgctgctggaaattcagtttctgaagtc
aagaatagtttggtagagaatcatagcaatgattcagatgcctcttccgactcaaagatc
cactcaaaatctgtcgacggaacggaacttactgatgctaaacactcgaacgtttctaca
tctcatcttaccgagggccaacttgctcagattcagaagaagcttgcaatggccgatgga
tcagttgttatgtcaaatgataacagtcatatcactcatgaaaagagcagagctgatgtt
gatgctggacacaaggctcatctatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCCGACAAAATGCTTTCGCAA 343 409 2143 Antisense
GCAATGATTCAGATGCCTCTTCCGA 317 321 2228 Antisense
TCTTCCGACTCAAAGATCCACTCAA 653 617 2245 Antisense
GATCCACTCAAAATCTGTCGACGGA 539 415 2259 Antisense
GACGGAACGGAACTTACTGATGCTA 247 375 2278 Antisense
AACACTCGAACGTTTCTACATCTCA 285 133 2303 Antisense
CTACATCTCATCTTACCGAGGGCCA 311 225 2318 Antisense
GAGGGCCAACTTGCTCAGATTCAGA 411 401 2335 Antisense
GAAGAAGCTTGCAATGGCCGATGGA 276 341 2358 Antisense
GGCCGATGGATCAGTTGTTATGTCA 281 543 2373 Antisense
GCTGGACACAAGGCTCATCTATCAA 373 295 2446 Antisense
Sequence Source Affymetrix Proprietary Database