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[187169_s_at]

Description T05H10.5 /REP_DB=WormBase Gene ID /WP=CE01642 /TR=SW:Q09349 /GB=CAA87792.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 65      6grp_total > 73      4grp_total > 55      6grp_cgc > 75      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 426
1 2 3 4 range
A 1167.1
(3)
P 		741
(-3)
P 		826.2
(-1.8)
P 		999.6
(0.6)
P 		426
B 955.5
(3)
P 		844.4
(-0.6)
P 		873.7
(0.3)
P 		771.8
(-3)
P 		184
C 1098.3
(3)
P 		752.8
(-3)
P 		1008.4
(1.4)
P 		878.7
(-0.8)
P 		346
avr 1073.6
(3) 		779.4
(-3) 		902.8
(-0.5) 		883.4
(-0.9) 		294

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 603
1 2 3 4 5 6 range
A 815.8
(-3)
P 		1140
(0.5)
P 		1204.9
(1.2)
P 		1375.8
(3)
P 		1356.1
(2.8)
P 		1271.8
(1.9)
P 		560
B 796.8
(-3)
P 		1265.7
(2.6)
P 		1034
(-0.1)
P 		1239.5
(2.3)
P 		1201.7
(1.9)
P 		1295.9
(3)
P 		499
C 772.5
(-3)
P 		931
(-1)
P 		1250.3
(3)
P 		1181.8
(2.1)
P 		988.8
(-0.3)
P 		966.4
(-0.6)
P 		478
avr 795
(-3) 		1112.2
(1) 		1163.1
(1.7) 		1265.7
(3) 		1182.2
(1.9) 		1178
(1.9) 		471
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 279
1 2 3 4 range
A 424.9
(3)
P 		160.9
(-2.7)
P 		216
(-1.5)
P 		146.3
(-3)
P 		279
B 304.7
(3)
P 		208.6
(-1.1)
P 		202.5
(-1.4)
P 		164.5
(-3)
P 		140
C 363.6
(3)
P 		216.4
(-1.1)
P 		351.5
(2.7)
P 		148.2
(-3)
P 		215
avr 364.4
(3) 		195.3
(-1.8) 		256.7
(-0.1) 		153
(-3) 		211

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 150.4
(-3)
P 		405.4
(2.9)
P 		262.4
(-0.4)
P 		348.9
(1.6)
P 		409.2
(3)
P 		309.6
(0.7)
P 		259
B 277.2
(-2.3)
P 		421.3
(1.3)
P 		251.1
(-3)
P 		328.3
(-1)
P 		488.2
(3)
P 		483.2
(2.9)
P 		237
C 286.3
(0.4)
P 		284.1
(0.2)
P 		318.2
(2.6)
P 		237.7
(-3)
P 		319.9
(2.7)
P 		323.5
(3)
P 		86
avr 238
(-3) 		370.3
(1.7) 		277.2
(-1.6) 		305
(-0.6) 		405.8
(3) 		372.1
(1.8) 		168
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187169_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3533
Sequence Type Exemplar sequence
Representative Public ID T05H10.5 NCBI
Target Description T05H10.5 /REP_DB=WormBase Gene ID /WP=CE01642 /TR=SW:Q09349 /GB=CAA87792.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027149(11), NM_063290(11), NM_063291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027149 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) (ufd-2) mRNA, complete cds. 11/11 None
NM_063290 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) (ufd-2) mRNA, complete cds. 11/11 None
NM_063291 NCBI Caenorhabditis elegans Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) (ufd-2) mRNA, complete cds. 11/11 None
SNAP00000019966 ENSEMBL cdna:SNAP chromosome:CEL140:II:8062673:8065864:1 11/11 None
GENEFINDER00000019969 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8062673:8065864:1 11/11 None
T05H10.5c ENSEMBL cdna:known chromosome:CEL140:II:8062664:8068029:1 gene:T05H10.5 11/11 A 
T05H10.5a ENSEMBL cdna:known chromosome:CEL140:II:8062673:8065864:1 gene:T05H10.5 11/11 None
T05H10.5b ENSEMBL cdna:known chromosome:CEL140:II:8062673:8065864:1 gene:T05H10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8062669-8065861(+) 100.0 100.0
Public Domain and Genome References
Ensembl T05H10.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04720 Hypothetical protein T05H10.5c [Caenorhabditis elegans] ref|NP_001022320.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] 0.0
blast CAA87792 Hypothetical protein T05H10.5a [Caenorhabditis elegans] ref|NP_495692.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 0.0
blast CAC70105 Hypothetical protein T05H10.5b [Caenorhabditis elegans] ref|NP_495691.1| Ubiquitin Fusion Degradation (yeast UFD homolog) family member (ufd-2) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 2.1E-56
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 2.1E-56
Pfam IPR003613 EMBL-EBI Zn-finger, modified RING 2.1E-56
Sequence
Target Sequence 
>C. ELEGANS:187169_S_AT
tatcgattaccgtaaactcacccgaacctttccgtactccggttctcggcgaaagacttg
ctgcaatgttgaatcacaatttatcgcaactcattggtagcaaggcctccgagttgaaag
tcaaggatccaagaagttatggatgggaaccacgggagtttgtatcgttgctgatctcaa
tctatttaaagctgaatatgcctgcatttgttaaatacatagcatacgacgagcgtacct
acagtcctgaattcttccataatgcgattgaatgcatgagaaagaatagtattgttggat
tcagtcaactcgaaagtttcgaacatttggccgaagatgttaaaaaagagtatgaggcaa
aagctgagcttgaagaagagtatgatgatgtaccagaagagttcaaggatcctattatgg
atgcaattatggttgatcctgtcaaattgccatcaggacacgtgatggatcgtgcagtca
tcgagaggcatcttctcagtacacccaataatccgtttaatcgtgctcccttgtcgcaca
atgagctttctcccgattctgagttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCGATTACCGTAAACTCACCCGA 37 659 2339 Antisense
GTACTCCGGTTCTCGGCGAAAGACT 399 1 2372 Antisense
AACTCATTGGTAGCAAGGCCTCCGA 298 141 2426 Antisense
GTATCGTTGCTGATCTCAATCTATT 63 455 2500 Antisense
GTACCTACAGTCCTGAATTCTTCCA 93 459 2573 Antisense
GGTTGATCCTGTCAAATTGCCATCA 288 507 2769 Antisense
GATCGTGCAGTCATCGAGAGGCATC 570 417 2806 Antisense
CATCTTCTCAGTACACCCAATAATC 667 211 2827 Antisense
ATAATCCGTTTAATCGTGCTCCCTT 268 25 2846 Antisense
CCTTGTCGCACAATGAGCTTTCTCC 227 269 2867 Antisense
AGCTTTCTCCCGATTCTGAGTTGAA 552 75 2882 Antisense
Sequence Source Affymetrix Proprietary Database