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[187168_s_at]

Description C02B8.2 /REP_DB=WormBase Gene ID /WP=CE03891 /TR=SW:Q11092 /GB=AAA81442.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 24.7
(-0.6)
A 		7.1
(-3)
A 		27.1
(-0.2)
A 		50.5
(3)
P 		43
B 29.7
(1.9)
A 		6.2
(-3)
A 		19.8
(-0.1)
A 		34.8
(3)
P 		29
C 40.2
(-0.6)
A 		49.6
(1)
A 		25
(-3)
A 		62.3
(3)
M 		37
avr 31.5
(-0.8) 		21
(-3) 		24
(-2.4) 		49.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 55.8
(3)
A 		3
(-3)
A 		16.3
(-1.5)
A 		12.9
(-1.9)
A 		43.9
(1.6)
A 		13.9
(-1.8)
A 		53
B 25.4
(-0.9)
A 		41.1
(0.8)
A 		61.4
(3)
A 		5.3
(-3)
A 		40.5
(0.8)
A 		17.2
(-1.7)
A 		56
C 10.4
(-3)
A 		56.1
(3)
M 		32.5
(-0.1)
A 		47.3
(1.8)
A 		39.4
(0.8)
A 		11
(-2.9)
A 		46
avr 30.5
(0.6) 		33.4
(1.3) 		36.7
(2) 		21.8
(-1.3) 		41.3
(3) 		14
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9
(3)
A 		1.6
(-3)
A 		7.1
(1.5)
A 		7.4
(1.7)
P 		7
B 9.5
(3)
A 		1.5
(-3)
A 		4.6
(-0.7)
A 		7.4
(1.4)
P 		8
C 13.3
(1.9)
A 		14.3
(3)
A 		8.7
(-3)
A 		10.5
(-1.1)
M 		6
avr 10.6
(3) 		5.8
(-3) 		6.8
(-1.8) 		8.4
(0.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.3
(1.6)
A 		1.1
(-3)
A 		3.5
(-1.8)
A 		3.3
(-1.9)
A 		13.2
(3)
A 		3.4
(-1.9)
A 		12
B 8.8
(-0)
A 		13.7
(1.9)
A 		14.9
(2.4)
A 		1.4
(-3)
A 		16.4
(3)
A 		6.4
(-1)
A 		15
C 3.9
(-2.9)
A 		17.1
(3)
M 		8.3
(-0.9)
A 		9.5
(-0.4)
A 		12.8
(1.1)
A 		3.7
(-3)
A 		13
avr 7.7
(-1) 		10.6
(0.8) 		8.9
(-0.3) 		4.7
(-2.9) 		14.1
(3) 		4.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187168_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16380
Sequence Type Exemplar sequence
Representative Public ID C02B8.2 NCBI
Target Description C02B8.2 /REP_DB=WormBase Gene ID /WP=CE03891 /TR=SW:Q11092 /GB=AAA81442.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075925(11), NM_076971(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075925 NCBI Caenorhabditis elegans F31A9.4 (F31A9.4) mRNA, complete cds. 11/11 None
NM_076971 NCBI Caenorhabditis elegans C02B8.2 (C02B8.2) mRNA, complete cds. 11/11 None
SNAP00000001642 ENSEMBL cdna:SNAP chromosome:CEL140:X:8144214:8144967:1 11/11 None
GENEFINDER00000001645 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8144373:8144967:1 11/11 None
SNAP00000037686 ENSEMBL cdna:SNAP chromosome:CEL140:X:1779383:1780522:1 11/11 None
F31A9.4 ENSEMBL cdna:known chromosome:CEL140:X:1779433:1780522:1 gene:F31A9.4 11/11 None
C02B8.2 ENSEMBL cdna:known chromosome:CEL140:X:8144373:8144967:1 gene:C02B8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000037698 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8144371-8144966(+) 100.0 100.0
chrX:1779927-1780522(+) 98.35 98.35
Public Domain and Genome References
Gene Title

Ensembl F31A9.4
C02B8.2
Entrez Gene 182103 Entrez gene
185139 Entrez gene
SwissProt Q11092 EMBL-EBI
Q19921 EMBL-EBI
WormBase CE03891 Wormbase
CE07165 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00602 Hypothetical protein F31A9.4 [Caenorhabditis elegans] ref|NP_508326.1| F31A9.4 [Caenorhabditis elegans] 1.0E-166
blast AAB00602 Hypothetical protein F31A9.4 [Caenorhabditis elegans] ref|NP_508326.1| F31A9.4 [Caenorhabditis elegans] 1.0E-121
blast AAA81442 Hypothetical protein C02B8.2 [Caenorhabditis elegans] ref|NP_509372.1| C02B8.2 [Caenorhabditis elegans] sp|Q11092|YWZ2_CAEEL Hypothetical protein C02B8.2 in chromosome X 1.0E-102
blast AAB00602 Hypothetical protein F31A9.4 [Caenorhabditis elegans] ref|NP_508326.1| F31A9.4 [Caenorhabditis elegans] 2.0E-79
blast AAA81442 Hypothetical protein C02B8.2 [Caenorhabditis elegans] ref|NP_509372.1| C02B8.2 [Caenorhabditis elegans] sp|Q11092|YWZ2_CAEEL Hypothetical protein C02B8.2 in chromosome X 2.0E-79
blast AAB00602 Hypothetical protein F31A9.4 [Caenorhabditis elegans] ref|NP_508326.1| F31A9.4 [Caenorhabditis elegans] 3.0E-78
Sequence
Target Sequence 
>C. ELEGANS:187168_S_AT
gaaaaactggaacttgattggccgttcgactttgaacatccaattgttacatccgcaaag
cttctagttttcaacatcgccacgttttttgataaaattcgcaatacgcgagtacacttt
acttatagcaaaagaaccttgaggaatctcaatcatagagttgactggtggaccaaagaa
ggaaaagatattggaacccattattctttcgacgttggatcggtaaaagaaggtaaatac
aatataaagcagatcaacaattttttcaaaggaagacttgataaaaaatcaatctcaaaa
acaggttgcgtttcattggaaatggacaatacatctcgatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAACTGGAACTTGATTGGCCGT 659 351 151 Antisense
GAACTTGATTGGCCGTTCGACTTTG 356 347 160 Antisense
CATCCAATTGTTACATCCGCAAAGC 709 209 187 Antisense
GTTACATCCGCAAAGCTTCTAGTTT 63 447 196 Antisense
AGCTTCTAGTTTTCAACATCGCCAC 250 79 209 Antisense
CAACATCGCCACGTTTTTTGATAAA 431 187 222 Antisense
AAATTCGCAATACGCGAGTACACTT 365 115 245 Antisense
TGGAACCCATTATTCTTTCGACGTT 611 545 342 Antisense
TATTCTTTCGACGTTGGATCGGTAA 155 663 352 Antisense
AACAGGTTGCGTTTCATTGGAAATG 289 133 450 Antisense
GGAAATGGACAATACATCTCGATTA 146 527 468 Antisense
Sequence Source Affymetrix Proprietary Database