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[187167_at]

Description F59B2.11 /REP_DB=WormBase Gene ID /WP=CE06032 /TR=SW:P34486 /GB=CAA77588.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 1.6
(-3)
A 		29.3
(3)
A 		9.2
(-1.4)
A 		25.8
(2.2)
A 		28
B 22.5
(3)
M 		2.3
(-2.7)
A 		6
(-1.6)
A 		1.1
(-3)
A 		21
C 1.6
(-3)
A 		6.4
(-2)
A 		23.5
(1.7)
A 		29.7
(3)
A 		28
avr 8.6
(-3) 		12.7
(-0.6) 		12.9
(-0.5) 		18.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 25.7
(-0.7)
A 		13.5
(-3)
A 		45.7
(3)
A 		16.7
(-2.4)
A 		19.9
(-1.8)
A 		21.6
(-1.5)
A 		32
B 6.5
(-2.3)
A 		14.4
(-0.8)
A 		22.8
(0.7)
A 		34.7
(3)
P 		27.2
(1.6)
P 		3
(-3)
A 		32
C 21.1
(0.1)
A 		37.9
(3)
M 		25.3
(0.8)
A 		34.1
(2.4)
A 		2.8
(-3)
A 		12.2
(-1.4)
A 		35
avr 17.8
(-1.3) 		21.9
(0) 		31.3
(3) 		28.5
(2.1) 		16.6
(-1.6) 		12.3
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.6
(-3)
A 		6.4
(3)
A 		2.4
(-1.1)
A 		3.8
(0.3)
A 		6
B 7.2
(3)
M 		0.6
(-2.7)
A 		1.4
(-2)
A 		0.2
(-3)
A 		7
C 0.5
(-3)
A 		1.8
(-2)
A 		8.2
(3)
A 		5
(0.5)
A 		8
avr 2.8
(-3) 		2.9
(-2.5) 		4
(3) 		3
(-2) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 4.7
(-2.5)
A 		4.8
(-2.4)
A 		10
(3)
A 		4.2
(-3)
A 		6
(-1.1)
A 		5.3
(-1.9)
A 		6
B 2.3
(-2.3)
A 		4.8
(-0.8)
A 		5.5
(-0.3)
A 		9.2
(1.9)
P 		11
(3)
P 		1.1
(-3)
A 		10
C 7.8
(0.9)
A 		11.6
(3)
M 		6.4
(0.1)
A 		6.9
(0.4)
A 		0.9
(-3)
A 		4.1
(-1.2)
A 		11
avr 4.9
(-0.8) 		7.1
(2.7) 		7.3
(3) 		6.8
(2.2) 		6
(0.9) 		3.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6968
Sequence Type Exemplar sequence
Representative Public ID F59B2.11 NCBI
Target Description F59B2.11 /REP_DB=WormBase Gene ID /WP=CE06032 /TR=SW:P34486 /GB=CAA77588.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066596(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066596 NCBI Caenorhabditis elegans F59B2.11 (F59B2.11) mRNA, complete cds. 11/11 None
SNAP00000012579 ENSEMBL cdna:SNAP chromosome:CEL140:III:9012342:9016867:1 11/11 None
GENEFINDER00000012584 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9012909:9020759:1 10/11 None
F59B2.11 ENSEMBL cdna:known chromosome:CEL140:III:9012909:9016867:1 gene:F59B2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9015268-9016863(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F59B2.11
Entrez Gene 186596 Entrez gene
SwissProt P34486 EMBL-EBI
WormBase CE37775 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77581 Hypothetical protein F59B2.12 [Caenorhabditis elegans] ref|NP_498998.1| F59B2.12 [Caenorhabditis elegans] sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chromosome III 0.0
blast S31132 hypothetical protein F59B2.12 - Caenorhabditis elegans 0.0
blast CAE62718 Hypothetical protein CBG06873 [Caenorhabditis briggsae] 0.0
blast CAA77588 Hypothetical protein F59B2.11 [Caenorhabditis elegans] ref|NP_498997.2| F59B2.11 [Caenorhabditis elegans] sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chromosome III precursor 1.0E-170
blast CAA77588 Hypothetical protein F59B2.11 [Caenorhabditis elegans] ref|NP_498997.2| F59B2.11 [Caenorhabditis elegans] sp|P34486|YMJA_CAEEL Hypothetical protein F59B2.11 in chromosome III precursor 1.0E-153
blast S31131 hypothetical protein F59B2.11 - Caenorhabditis elegans 4.0E-98
blast S31131 hypothetical protein F59B2.11 - Caenorhabditis elegans 9.0E-87
Sequence
Target Sequence 
>C. ELEGANS:187167_AT
atggaaactccattcgcaaagaaagtaatctttcaaatgacgaagaaaccgatgaagttg
tcgatacacatagaatcaatactgaagatgatgaagaagatgaagagaagcctccaacag
aaaaaggaacaccgaagagaaaggatcgtaagagtgattcgaggtcgacatcaaaaggat
ttggctcaggaggtagaggacgtgctgaatatactgaagatggcgatgatgatgaatcga
atcgtagatctgttaactttgaaaaagatggaaatggaagaatggtaaagactgaaacag
agagaagcagtactcatgctcaagattatgataagaaaggttccaaaaagaagaagcatc
gcgtcagtgaaaatggttcagaagaggaagaagtctcaacatcattttcatcttcatcca
gcaaatcttcatcttcttcttcattgtcacgtagaacaacttgggacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAAACTCCATTCGCAAAGAAAG 36 53 521 Antisense
AACCGATGAAGTTGTCGATACACAT 156 147 567 Antisense
GGCTCAGGAGGTAGAGGACGTGCTG 34 537 703 Antisense
GAATCGTAGATCTGTTAACTTTGAA 129 329 759 Antisense
GAGAAGCAGTACTCATGCTCAAGAT 135 391 822 Antisense
GAAGAAGCATCGCGTCAGTGAAAAT 629 339 870 Antisense
AGGAAGAAGTCTCAACATCATTTTC 70 55 905 Antisense
TCATTTTCATCTTCATCCAGCAAAT 698 619 922 Antisense
CATCCAGCAAATCTTCATCTTCTTC 366 211 935 Antisense
ATCTTCTTCTTCATTGTCACGTAGA 660 29 951 Antisense
GTCACGTAGAACAACTTGGGACGGT 573 463 966 Antisense
Sequence Source Affymetrix Proprietary Database