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[187165_at]

Description C28C12.11 /REP_DB=WormBase Gene ID /WP=CE04100 /TR=Q18275 /GB=AAB37554.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 10      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 69.8
(-1.7)
A 		54.3
(-2.3)
A 		38.1
(-3)
A 		181.3
(3)
A 		143
B 62.7
(-3)
A 		108.2
(0.4)
A 		96.5
(-0.4)
A 		142.2
(3)
A 		80
C 80.6
(-2.9)
A 		93.5
(-2.5)
A 		77.6
(-3)
A 		252.7
(3)
P 		175
avr 71
(-3) 		85.3
(-2.3) 		70.7
(-3) 		192.1
(3) 		121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 462
1 2 3 4 5 6 range
A 90.2
(-2.5)
A 		87.8
(-2.6)
A 		77.4
(-2.8)
A 		69.5
(-3)
A 		210.9
(0.2)
P 		333.2
(3)
P 		264
B 95.6
(-2.1)
A 		79.2
(-2.5)
A 		60.8
(-3)
A 		78.3
(-2.5)
A 		228
(1.5)
P 		283.2
(3)
P 		222
C 68.7
(-2.3)
A 		112.8
(-1.7)
A 		15.2
(-3)
A 		79.1
(-2.2)
A 		150.5
(-1.2)
A 		476.9
(3)
P 		462
avr 84.8
(-2.4) 		93.3
(-2.2) 		51.1
(-3) 		75.6
(-2.5) 		196.5
(-0.2) 		364.4
(3) 		313
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 25.4
(2.6)
A 		11.8
(-2.3)
A 		10
(-3)
A 		26.5
(3)
A 		17
B 20
(-3)
A 		26.7
(0.9)
A 		22.4
(-1.6)
A 		30.3
(3)
A 		10
C 26.7
(-3)
A 		26.9
(-2.9)
A 		27
(-2.9)
A 		42.6
(3)
P 		16
avr 24
(-1.1) 		21.8
(-2.1) 		19.8
(-3) 		33.1
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 16.6
(-3)
A 		31.2
(-1.6)
A 		16.8
(-3)
A 		17.6
(-2.9)
A 		63.6
(1.4)
P 		81.1
(3)
P 		65
B 33.3
(-1.8)
A 		26.4
(-2.2)
A 		14.8
(-3)
A 		20.7
(-2.6)
A 		92.7
(2.1)
P 		105.6
(3)
P 		91
C 25.5
(-2.2)
A 		34.4
(-1.8)
A 		3.9
(-3)
A 		15.9
(-2.5)
A 		48.7
(-1.3)
A 		159.7
(3)
P 		156
avr 25.1
(-2.2) 		30.7
(-1.9) 		11.8
(-3) 		18.1
(-2.6) 		68.3
(0.3) 		115.5
(3) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187165_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9680
Sequence Type Exemplar sequence
Representative Public ID C28C12.11 NCBI
Target Description C28C12.11 /REP_DB=WormBase Gene ID /WP=CE04100 /TR=Q18275 /GB=AAB37554.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069042(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069042 NCBI Caenorhabditis elegans C28C12.11 (C28C12.11) mRNA, complete cds. 10/11 None
SNAP00000012161 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8474109:8475210:1 11/11 None
GENEFINDER00000012183 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8474109:8475210:1 11/11 None
C28C12.11 ENSEMBL cdna:known chromosome:CEL140:IV:8474109:8475221:1 gene:C28C12.11 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8472814-8475216(+) 98.39 100.0
Public Domain and Genome References
Gene Title
Ensembl C28C12.11
Entrez Gene 177650 Entrez gene
SwissProt Q18275 EMBL-EBI
WormBase CE29192 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37554 Hypothetical protein C28C12.11 [Caenorhabditis elegans] ref|NP_501443.1| C28C12.11 [Caenorhabditis elegans] 1.0E-110
blast AAB37554 Hypothetical protein C28C12.11 [Caenorhabditis elegans] ref|NP_501443.1| C28C12.11 [Caenorhabditis elegans] 1.0E-108
blast CAE71548 Hypothetical protein CBG18491 [Caenorhabditis briggsae] 5.0E-74
blast CAE71548 Hypothetical protein CBG18491 [Caenorhabditis briggsae] 2.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501443.1 3 7-26,90-112,119-141
C28C12.11 3 7-26,90-112,119-141
SNAP00000012161 3 7-26,93-115,122-144
GENEFINDER00000012183 3 7-26,93-115,122-144
Sequence
Target Sequence 
>C. ELEGANS:187165_AT
aaaagtgtcatcttcatccagtgcatcatccgaacttcagtttcaccgaaaacttgaaaa
ctaacgatcatttgattgatccaagtcatcaagtcaccatttgtcaccgtttgaaatggt
ctcactattcattctgggatagcatgtattgtttagatttgatcctcttgccggctctca
cttgtgtttttctgattttctacacagttcttgagatttgtgaatttgacgtgtttgttg
gacaggtacaaactactggcttggttattgtatcagcaatatcggtaatttactctatcg
cagtaatcactcacgaaaagaatcgaattgagacggaatggccattgctcgctcatgctt
atgtccttggagcaaaagaaggagaaacaaccgttaatgtaccaaaaacgtggcaatata
gtattgctatgtgcattctgtcagcccttttcaagatcggaagggttttggttcaacatt
tcattggtgataagaagttcttctttgatgacgatagccaaagggacgatcaaaatggtg
aacctgtgctgttggctggaagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAAGTGTCATCTTCATCCAGTGCA 292 133 131 Antisense
GTGCATCATCCGAACTTCAGTTTCA 668 479 151 Antisense
CAAGTCACCATTTGTCACCGTTTGA 242 185 220 Antisense
TGGTCTCACTATTCATTCTGGGATA 146 553 247 Antisense
TGTTTAGATTTGATCCTCTTGCCGG 323 561 280 Antisense
CGGCTCTCACTTGTGTTTTTCTGAT 620 241 302 Antisense
TGAGACGGAATGGCCATTGCTCGCT 160 569 459 Antisense
CTCGCTCATGCTTATGTCCTTGGAG 578 233 478 Antisense
ATTGCTATGTGCATTCTGTCAGCCC 123 7 553 Antisense
CTGTCAGCCCTTTTCAAGATCGGAA 39 239 568 Antisense
GAACCTGTGCTGTTGGCTGGAAGTG 124 347 670 Antisense
Sequence Source Affymetrix Proprietary Database