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[187162_s_at]

Description Y38A10A.2 /REP_DB=WormBase Gene ID /WP=CE21559 /TR=Q9UAX6 /GB=AAD14743.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_high_8_8 > 54      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 57      6grp_highest_sub > 04_05      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 692
1 2 3 4 range
A 92.4
(-2.9)
P 		542.1
(2)
P 		633.4
(3)
P 		80.8
(-3)
P 		553
B 86.8
(-2.7)
P 		603.9
(2.1)
P 		695.6
(3)
P 		49.7
(-3)
M 		646
C 91.1
(-3)
P 		678.5
(2.4)
P 		741.7
(3)
P 		125.6
(-2.7)
P 		651
avr 90.1
(-3) 		608.2
(2.2) 		690.2
(3) 		85.4
(-3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 616
1 2 3 4 5 6 range
A 109.6
(-3)
P 		306.3
(-0.3)
P 		287
(-0.5)
P 		541.6
(3)
P 		481
(2.2)
P 		150.6
(-2.4)
P 		432
B 130.3
(-2.7)
P 		312.9
(-0.3)
P 		265.4
(-1)
P 		562.1
(3)
P 		494.9
(2.1)
P 		111.5
(-3)
P 		451
C 121.1
(-3)
P 		231.1
(-1.9)
P 		232.2
(-1.9)
P 		726
(3)
P 		472.7
(0.5)
P 		134.7
(-2.9)
P 		605
avr 120.3
(-3) 		283.4
(-1) 		261.5
(-1.3) 		609.9
(3) 		482.9
(1.4) 		132.3
(-2.9) 		490
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 248
1 2 3 4 range
A 33.6
(-2.1)
P 		117.7
(1.1)
P 		165.6
(3)
P 		11.8
(-3)
P 		154
B 27.7
(-2.3)
P 		149.1
(2.5)
P 		161.2
(3)
P 		10.6
(-3)
M 		151
C 30.2
(-2.8)
P 		195.1
(1.4)
P 		258.5
(3)
P 		21.2
(-3)
P 		237
avr 30.5
(-2.5) 		154
(1.6) 		195.1
(3) 		14.5
(-3) 		181

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 20.2
(-3)
P 		108.9
(1.3)
P 		62.5
(-1)
P 		137.4
(2.6)
P 		145.1
(3)
P 		36.7
(-2.2)
P 		125
B 45.3
(-2.9)
P 		104.2
(-0.6)
P 		64.4
(-2.1)
P 		148.9
(1)
P 		201.1
(3)
P 		41.6
(-3)
P 		160
C 44.9
(-3)
P 		70.5
(-1.6)
P 		59.1
(-2.2)
P 		146
(2.6)
P 		153
(3)
P 		45.1
(-3)
P 		108
avr 36.8
(-3) 		94.5
(-0.3) 		62
(-1.8) 		144.1
(2) 		166.4
(3) 		41.1
(-2.8) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187162_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11570
Sequence Type Exemplar sequence
Representative Public ID Y38A10A.2 NCBI
Target Description Y38A10A.2 /REP_DB=WormBase Gene ID /WP=CE21559 /TR=Q9UAX6 /GB=AAD14743.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072169(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072169 NCBI Caenorhabditis elegans Y38A10A.2 (Y38A10A.2) mRNA, complete cds. 11/11 None
SNAP00000035777 ENSEMBL cdna:SNAP chromosome:CEL140:V:6060170:6063347:-1 11/11 None
GENEFINDER00000035793 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6060170:6066019:-1 11/11 None
Y38A10A.2 ENSEMBL cdna:known chromosome:CEL140:V:6060004:6062793:-1 gene:Y38A10A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6060169-6062793(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38A10A.2
Entrez Gene 178994 Entrez gene
SwissProt Q9UAX6 EMBL-EBI
WormBase CE21559 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14743 Hypothetical protein Y38A10A.2 [Caenorhabditis elegans] ref|NP_504570.1| Y38A10A.2 [Caenorhabditis elegans] 0.0
blast CAE64520 Hypothetical protein CBG09258 [Caenorhabditis briggsae] 0.0
blast AAC04456 Hypothetical protein T23E1.1 [Caenorhabditis elegans] ref|NP_500296.2| T23E1.1 [Caenorhabditis elegans] 1.0E-13
blast AAC04456 Hypothetical protein T23E1.1 [Caenorhabditis elegans] ref|NP_500296.2| T23E1.1 [Caenorhabditis elegans] 4.0E-12
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 4.4E-9
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 4.4E-9
Sequence
Target Sequence 
>C. ELEGANS:187162_S_AT
atcttctcacaagcttctctagactatccaaaaaccaagtgatagttccagttcttgatg
actttatggattggaagagaaaacatgtacgtggaatttcaccttggcaaacattaattc
cacgcaaccgaacatgctaccacgttccgattgccgatgagttctgtctttgtatggata
gaaagatggatattgagagggaatacaatcaaacatttgccattgcacaacgattatatg
acaaaatggagtcagatattctatcaaactatagttgtatgcacgagacaacttggattg
aggagagaaattacacatccgtctataacttgaatgaaaaagtattaaatggaactgaag
aatatattgagttcttgatatttggagtcagggcattcccgaaaaaaattaatagattag
gaaatttcttcgtgaacgtactaggcatgttcaagcataatttcaatgatgattacaatt
tcgaaagagcttatccatacgtgtcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCTCACAAGCTTCTCTAGACT 408 31 815 Antisense
GATAGTTCCAGTTCTTGATGACTTT 245 425 855 Antisense
GTGGAATTTCACCTTGGCAAACATT 51 491 905 Antisense
GCAAACATTAATTCCACGCAACCGA 280 319 921 Antisense
AATTCCACGCAACCGAACATGCTAC 552 177 930 Antisense
CCACGTTCCGATTGCCGATGAGTTC 542 273 954 Antisense
GCCGATGAGTTCTGTCTTTGTATGG 524 283 967 Antisense
AACATTTGCCATTGCACAACGATTA 422 137 1026 Antisense
GAAATTACACATCCGTCTATAACTT 470 361 1121 Antisense
ATTTGGAGTCAGGGCATTCCCGAAA 247 19 1194 Antisense
GAAAGAGCTTATCCATACGTGTCAG 417 359 1297 Antisense
Sequence Source Affymetrix Proprietary Database