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[187161_s_at]

Description R107.5A /REP_DB=WormBase Gene ID /WP=CE00300 /TR=SW:P32743 /GB=CAA78470.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 69      6grp_total > 76      4grp_total > 05      6grp_highest_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3750
1 2 3 4 range
A 2095.7
(-0.7)
P 		649.8
(-3)
P 		826.8
(-2.7)
P 		4378.6
(3)
P 		3729
B 2322
(0.1)
P 		628.6
(-3)
P 		810
(-2.7)
P 		3912.6
(3)
P 		3284
C 2192.8
(-0.1)
P 		641.6
(-3)
P 		801.7
(-2.7)
P 		3821.2
(3)
P 		3180
avr 2203.5
(-0.2) 		640
(-3) 		812.8
(-2.7) 		4037.5
(3) 		3398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2866
1 2 3 4 5 6 range
A 1711.9
(-3)
P 		1805.9
(-2.7)
P 		2222.4
(-1.4)
P 		2353.4
(-1)
P 		2389.9
(-0.9)
P 		3628.5
(3)
P 		1917
B 1572.2
(-3)
P 		1954.2
(-1.9)
P 		2653.2
(0.2)
P 		2224.3
(-1.1)
P 		2787
(0.5)
P 		3631.2
(3)
P 		2059
C 1070.1
(-3)
P 		1988.3
(-1.1)
P 		1953.3
(-1.2)
P 		2745.5
(0.5)
P 		2315
(-0.4)
P 		3935.9
(3)
P 		2866
avr 1451.4
(-3) 		1916.1
(-1.8) 		2276.3
(-0.8) 		2441.1
(-0.4) 		2497.3
(-0.2) 		3731.9
(3) 		2281
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 693
1 2 3 4 range
A 763.1
(3)
P 		141.1
(-3)
P 		216.1
(-2.3)
P 		640.9
(1.8)
P 		622
B 740.5
(2.2)
P 		155.3
(-3)
P 		187.7
(-2.7)
P 		833.8
(3)
P 		679
C 725.9
(3)
P 		184.5
(-3)
P 		279.4
(-1.9)
P 		644.3
(2.1)
P 		541
avr 743.2
(3) 		160.3
(-3) 		227.7
(-2.3) 		706.3
(2.6) 		583

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1038
1 2 3 4 5 6 range
A 315.6
(-3)
P 		642.3
(0.5)
P 		484
(-1.2)
P 		596.9
(-0)
P 		721.2
(1.3)
P 		883.4
(3)
P 		568
B 547
(-3)
P 		650.5
(-2.2)
P 		644.3
(-2.3)
P 		589.1
(-2.7)
P 		1132.3
(1.4)
P 		1354
(3)
P 		807
C 396.6
(-3)
P 		606.7
(-1.6)
P 		497.2
(-2.3)
P 		552.1
(-2)
P 		749.1
(-0.7)
P 		1317.6
(3)
P 		921
avr 419.7
(-3) 		633.2
(-1.3) 		541.8
(-2) 		579.4
(-1.7) 		867.5
(0.5) 		1185
(3) 		765
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187161_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7592
Sequence Type Exemplar sequence
Representative Public ID R107.5A NCBI
Target Description R107.5A /REP_DB=WormBase Gene ID /WP=CE00300 /TR=SW:P32743 /GB=CAA78470.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066602(11), NM_066603(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066602 NCBI Caenorhabditis elegans R107.5b (R107.5) mRNA, complete cds. 11/11 None
NM_066603 NCBI Caenorhabditis elegans R107.5a (R107.5) mRNA, complete cds. 11/11 None
SNAP00000003025 ENSEMBL cdna:SNAP chromosome:CEL140:III:9051662:9052424:-1 10/11 None
GENEFINDER00000003034 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9051662:9053689:-1 11/11 None
R107.5b ENSEMBL cdna:known chromosome:CEL140:III:9051076:9053690:-1 gene:R107.5 11/11 None
R107.5a ENSEMBL cdna:known chromosome:CEL140:III:9051517:9053691:-1 gene:R107.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9051657-9053685(-) 100.0 100.0
Public Domain and Genome References
Ensembl R107.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54285 Hypothetical protein R107.5b [Caenorhabditis elegans] ref|NP_499003.1| R107.5b [Caenorhabditis elegans] sp|P32743|YNH5_CAEEL Hypothetical protein R107.5 in chromosome III 1.0E-137
blast CAA78470 Hypothetical protein R107.5a [Caenorhabditis elegans] ref|NP_499004.1| R107.5a [Caenorhabditis elegans] 1.0E-134
blast CAA78470 Hypothetical protein R107.5a [Caenorhabditis elegans] ref|NP_499004.1| R107.5a [Caenorhabditis elegans] 1.0E-126
blast CAB54285 Hypothetical protein R107.5b [Caenorhabditis elegans] ref|NP_499003.1| R107.5b [Caenorhabditis elegans] sp|P32743|YNH5_CAEEL Hypothetical protein R107.5 in chromosome III 1.0E-124
Sequence
Target Sequence 
>C. ELEGANS:187161_S_AT
aataagcgcctgcctggaaaacttctcaatttcaaatgacaaaccgtcgccaatcaatat
ggaatcatcgtccgacgaagaaatggatgaagtttacgacgattcaaactttgaccaatg
cactgaatcaacttctattccattggtggttgagccagatgatgagccggcagtagccaa
aaagattcgattggatgaatctattcaacgatactttgaaaagtgccgccagggtcctat
tgatttcttaccaaaaccagaaaagttgaaaggaaatgaaatggttatctggcagccgcg
aattctggtttcaccaaagaacgacttcaatatggctggtcgaatacaagagattgacga
cgaggaggaagatcgagttaacgaagagatcaagactcgtatcattgagaatgaaggcat
gatcgatgaagacacgcgcaacgaaacaacgggaatcgttgaactgggcaccggctcgga
tcacagcgatattggatcttcgtggagctctccaatggcttcgccaactggttcttctca
aattgtggaactcgatcctgattctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAAGCGCCTGCCTGGAAAACTTC 449 169 210 Antisense
AATCAACTTCTATTCCATTGGTGGT 397 171 335 Antisense
CAGATGATGAGCCGGCAGTAGCCAA 133 207 365 Antisense
TTTGAAAAGTGCCGCCAGGGTCCTA 343 667 424 Antisense
CGCCAGGGTCCTATTGATTTCTTAC 235 257 436 Antisense
GAAATGGTTATCTGGCAGCCGCGAA 551 361 487 Antisense
GCCGCGAATTCTGGTTTCACCAAAG 494 285 504 Antisense
ACCGGCTCGGATCACAGCGATATTG 259 89 679 Antisense
GATATTGGATCTTCGTGGAGCTCTC 245 427 697 Antisense
CAATGGCTTCGCCAACTGGTTCTTC 395 183 722 Antisense
TTGTGGAACTCGATCCTGATTCTCC 585 707 752 Antisense
Sequence Source Affymetrix Proprietary Database