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[187159_at]

Description ZK757.1 /REP_DB=WormBase Gene ID /WP=CE00467 /TR=SW:P34679 /GB=CAA82387.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 38      6grp_total > 37      4grp_total > 55      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 234.3
(3)
P 		119.9
(-3)
A 		150.9
(-1.4)
A 		155
(-1.2)
A 		114
B 239.7
(3)
P 		117.7
(-3)
A 		167
(-0.6)
A 		144.8
(-1.7)
P 		122
C 279.6
(3)
P 		252.3
(1.7)
A 		209.7
(-0.3)
A 		153.2
(-3)
P 		126
avr 251.2
(3) 		163.3
(-2.3) 		175.9
(-1.5) 		151
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 265
1 2 3 4 5 6 range
A 264.7
(-0.1)
M 		302.5
(1.8)
P 		231.9
(-1.7)
P 		282
(0.7)
P 		205.9
(-3)
A 		327.9
(3)
P 		122
B 300.7
(3)
P 		233.7
(-2.1)
P 		233
(-2.2)
P 		253.4
(-0.6)
M 		222.3
(-3)
P 		251.1
(-0.8)
P 		78
C 470.9
(3)
P 		242.6
(-2.6)
P 		229.5
(-3)
M 		262.6
(-2.1)
A 		228.2
(-3)
M 		319.6
(-0.7)
P 		243
avr 345.4
(3) 		259.6
(-1.1) 		231.5
(-2.4) 		266
(-0.8) 		218.8
(-3) 		299.5
(0.8) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 85.3
(3)
P 		26
(-2.7)
A 		39.4
(-1.4)
A 		22.7
(-3)
A 		63
B 76.4
(3)
P 		29.1
(-3)
A 		38.7
(-1.8)
A 		30.9
(-2.8)
P 		47
C 92.6
(3)
P 		72.5
(1.2)
A 		73.1
(1.2)
A 		25.8
(-3)
P 		67
avr 84.8
(3) 		42.5
(-1.4) 		50.4
(-0.5) 		26.5
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 48.8
(-3)
M 		107.6
(3)
P 		50.5
(-2.8)
P 		71.5
(-0.7)
P 		62.1
(-1.6)
A 		79.8
(0.2)
P 		59
B 104.6
(3)
P 		77.8
(-0.4)
P 		56.6
(-3)
P 		67.1
(-1.7)
M 		90.3
(1.2)
P 		93.6
(1.6)
P 		48
C 174.5
(3)
P 		74
(-2)
P 		58.4
(-2.7)
M 		52.8
(-3)
A 		73.9
(-2)
M 		107
(-0.3)
P 		122
avr 109.3
(3) 		86.5
(0.5) 		55.2
(-3) 		63.8
(-2) 		75.4
(-0.8) 		93.5
(1.2) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6201
Sequence Type Exemplar sequence
Representative Public ID ZK757.1 NCBI
Target Description ZK757.1 /REP_DB=WormBase Gene ID /WP=CE00467 /TR=SW:P34679 /GB=CAA82387.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027861(10), NM_001027862(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027861 NCBI Caenorhabditis elegans ZK757.4a (ZK757.4) mRNA, complete cds. 10/11 None
NM_001027862 NCBI Caenorhabditis elegans ZK757.4b (ZK757.4) mRNA, complete cds. 10/11 None
GENEFINDER00000014939 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9864723:9871016:-1 10/11 None
SNAP00000014934 ENSEMBL cdna:SNAP chromosome:CEL140:III:9864727:9867100:-1 10/11 None
ZK757.4a ENSEMBL cdna:known chromosome:CEL140:III:9863153:9867679:-1 gene:ZK757.4 10/11 None
ZK757.4b ENSEMBL cdna:known chromosome:CEL140:III:9863691:9867205:-1 gene:ZK757.4 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9864718-9870997(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK757.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD54174 Hypothetical protein ZK757.4a [Caenorhabditis elegans] emb|CAD54147.2| Hypothetical protein ZK757.4a [Caenorhabditis elegans] ref|NP_001023032.1| ZK757.4a [Caenorhabditis elegans] sp|Q8I0G4|YO44_CAEEL Hypothetical protein ZK757.4 in chromosome III 0.0
blast CAH19096 Hypothetical protein ZK757.4b [Caenorhabditis elegans] emb|CAH19086.1| Hypothetical protein ZK757.4b [Caenorhabditis elegans] ref|NP_001023033.1| ZK757.4b [Caenorhabditis elegans] 0.0
blast CAA82387 Hypothetical protein ZK757.1 [Caenorhabditis elegans] ref|NP_871712.1| ZK757.1 [Caenorhabditis elegans] sp|P34679|YO41_CAEEL Hypothetical protein ZK757.1 in chromosome III 1.0E-152
blast CAD54174 Hypothetical protein ZK757.4a [Caenorhabditis elegans] emb|CAD54147.2| Hypothetical protein ZK757.4a [Caenorhabditis elegans] ref|NP_001023032.1| ZK757.4a [Caenorhabditis elegans] sp|Q8I0G4|YO44_CAEEL Hypothetical protein ZK757.4 in chromosome III 1.0E-148
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.9E-27
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.9E-27
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 7.2E-27
Pfam IPR010601 EMBL-EBI Protein of unknown function DUF1182 6.9E-29
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 2.9E-27
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023032.1 4 17-39,54-73,177-199,237-259
NP_001023033.1 4 21-43,53-75,179-201,239-261
ZK757.4a 4 17-39,54-73,177-199,237-259
ZK757.4b 4 21-43,53-75,179-201,239-261
GENEFINDER00000014939 11 27-49,62-84,106-128,140-162,182-204,225-247,267-289,329-351,366-388,487-509,529-551
SNAP00000014934 4 21-43,53-75,178-200,220-242
Sequence
Target Sequence 
>C. ELEGANS:187159_AT
gcatcgagggagcttccaaggcgacatatgagtctgttaaagatgacgagagacaattgc
agctatttctttctgatattgctagagaaagagatttgacacttctcgttcgaggatttg
atcatggaattcgattctgtgataaatgttgttgtatcaagcccgatcgatctcatcatt
gctcaatgtgtgaacaatgtgttttaaagtttgatcatcactgtccatgggtgaataatt
gcgtcaatttcggaaattacaagtattttattctattcttggcgctctcaaatatttata
ttagccaggcgcaaaatttttcgtgtttttatttttattttcagaatggacgattccctt
tggtatttcttctgtttctttcgtgcatgttctcactgtcactctcatttctattcttct
atcatctttatttgactgccaaaaatcgaacgactgttgaatccttccgagcaccaatga
tcgatggaaaatatgcgaaagacgccttcaaccacgggattcgagcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCGAGGGAGCTTCCAAGGCGAC 639 299 1193 Antisense
AGATTTGACACTTCTCGTTCGAGGA 240 65 1284 Antisense
GTTGTTGTATCAAGCCCGATCGATC 607 437 1340 Antisense
CCGATCGATCTCATCATTGCTCAAT 144 265 1355 Antisense
TATTCTATTCTTGGCGCTCTCAAAT 444 663 1461 Antisense
GACGATTCCCTTTGGTATTTCTTCT 450 377 1541 Antisense
TTTCGTGCATGTTCTCACTGTCACT 530 669 1571 Antisense
CTCATTTCTATTCTTCTATCATCTT 611 229 1596 Antisense
ATCGAACGACTGTTGAATCCTTCCG 707 35 1637 Antisense
GAATCCTTCCGAGCACCAATGATCG 233 329 1651 Antisense
CGCCTTCAACCACGGGATTCGAGCG 655 255 1695 Antisense
Sequence Source Affymetrix Proprietary Database