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[187158_at]

Description F35D11.10 /REP_DB=WormBase Gene ID /WP=CE02713 /TR=Q20039 /GB=AAA68756.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 31      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 163
(3)
P 		7
(-3)
A 		8.5
(-2.9)
A 		107
(0.8)
A 		156
B 223.7
(3)
P 		42.9
(-3)
A 		58.7
(-2.5)
A 		82.9
(-1.7)
A 		181
C 146.6
(3)
P 		74.5
(-1.7)
A 		54.5
(-3)
A 		136.3
(2.3)
P 		92
avr 177.8
(3) 		41.5
(-3) 		40.6
(-3) 		108.7
(-0) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 128.1
(3)
P 		53
(-3)
A 		74.2
(-1.3)
P 		57.5
(-2.6)
A 		59.1
(-2.5)
A 		101.5
(0.9)
P 		75
B 100
(3)
P 		43.4
(-3)
P 		61.7
(-1.1)
A 		61.1
(-1.1)
A 		73.6
(0.2)
A 		90.2
(2)
P 		57
C 169.2
(3)
P 		83.8
(-0.6)
P 		25.6
(-3)
A 		31.6
(-2.7)
A 		56.9
(-1.7)
A 		133.6
(1.5)
P 		144
avr 132.4
(3) 		60.1
(-2.3) 		53.8
(-2.7) 		50.1
(-3) 		63.2
(-2) 		108.4
(1.3) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 59.4
(3)
P 		1.5
(-3)
A 		2.2
(-2.9)
A 		15.7
(-1.5)
A 		58
B 71.3
(3)
P 		10.6
(-3)
A 		13.6
(-2.7)
A 		17.7
(-2.3)
A 		61
C 48.5
(3)
P 		21.4
(-2.5)
A 		19
(-3)
A 		23
(-2.2)
P 		30
avr 59.7
(3) 		11.2
(-3) 		11.6
(-3) 		18.8
(-2.1) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 23.6
(2.3)
P 		18.8
(-0.5)
A 		16.2
(-2)
P 		14.6
(-3)
A 		17.8
(-1.1)
A 		24.7
(3)
P 		10
B 34.8
(3)
P 		14.4
(-3)
P 		15
(-2.8)
A 		16.2
(-2.5)
A 		29.9
(1.6)
A 		33.6
(2.6)
P 		20
C 62.7
(3)
P 		25.6
(-1)
P 		6.5
(-3)
A 		6.4
(-3)
A 		18.4
(-1.7)
A 		44.7
(1.1)
P 		56
avr 40.4
(3) 		19.6
(-1.5) 		12.6
(-3) 		12.4
(-3) 		22
(-0.9) 		34.3
(1.7) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187158_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5805
Sequence Type Exemplar sequence
Representative Public ID F35D11.10 NCBI
Target Description F35D11.10 /REP_DB=WormBase Gene ID /WP=CE02713 /TR=Q20039 /GB=AAA68756.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062415(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062415 NCBI Caenorhabditis elegans F35D11.10 (F35D11.10) mRNA, complete cds. 11/11 None
SNAP00000013543 ENSEMBL cdna:SNAP chromosome:CEL140:II:4618915:4621728:-1 10/11 None
GENEFINDER00000013552 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4620149:4621728:-1 10/11 None
F35D11.10 ENSEMBL cdna:known chromosome:CEL140:II:4620149:4621728:-1 gene:F35D11.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4620147-4621727(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.10
Entrez Gene 185283 Entrez gene
WormBase CE39016 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68756 Hypothetical protein F35D11.10 [Caenorhabditis elegans] 1.0E-125
blast NP_494816 F35D11.10 [Caenorhabditis elegans] 1.0E-123
blast AAA68756 Hypothetical protein F35D11.10 [Caenorhabditis elegans] 1.0E-121
blast NP_494816 F35D11.10 [Caenorhabditis elegans] 1.0E-121
blast NP_494816 F35D11.10 [Caenorhabditis elegans] 1.0E-120
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 1.0E-103
blast CAE67872 Hypothetical protein CBG13465 [Caenorhabditis briggsae] 4.0E-95
Sequence
Target Sequence 
>C. ELEGANS:187158_AT
tttctgattcttattgttgccttatgcggcgttgttgaagcatctaatgcaacagagaaa
gaagttgtatgtccgaaaggattcaagttgtatgagaggaagccgacgcagaggaataag
ttcacgaagaactggtgtatgaaggtaatagaaaacgaggatgtctatgatcgacctatc
gcaagatcagtttgcctagattatgacgcagttattacgaatgtcgagaaccaagaggag
ctggatgatatcaatgctttaattcgaaaaaacaataaacgagtcgcagtggacggagtg
ttcaatccaaaatgccgaggtttcagcgactggcgaatgagaaagtttggaggactttgc
gcaaaagaaaaagaggacgatcacaccgatccagcgttcattctcacaaagtggtctgga
gaaccgccaacttcatcagacaagtatcaggagaagggggactctacagaaattttcaca
atcgctgaatgtctatctctacataatctccaggcaatcaagaatactggaaatttgaag
gattttttgtgcggcgaagaaccagacaaacaagtcggcgaggtgccattcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCTGATTCTTATTGTTGCCTTAT 616 671 25 Antisense
GTTGCCTTATGCGGCGTTGTTGAAG 390 439 40 Antisense
GGATGTCTATGATCGACCTATCGCA 468 513 183 Antisense
GTCGCAGTGGACGGAGTGTTCAATC 352 475 307 Antisense
ATGCCGAGGTTTCAGCGACTGGCGA 476 39 336 Antisense
AAAGAGGACGATCACACCGATCCAG 477 121 394 Antisense
ATCCAGCGTTCATTCTCACAAAGTG 150 39 413 Antisense
AAGTGGTCTGGAGAACCGCCAACTT 243 159 433 Antisense
CAATCGCTGAATGTCTATCTCTACA 506 181 503 Antisense
ATCTCTACATAATCTCCAGGCAATC 261 33 519 Antisense
ACAAGTCGGCGAGGTGCCATTCTTC 396 113 594 Antisense
Sequence Source Affymetrix Proprietary Database