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[187157_at]

Description Y57A10A.28 /REP_DB=WormBase Gene ID /WP=CE22604 /TR=Q9NA73 /GB=CAB55033.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 46      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 94.8
(3)
A 		58.8
(-0.6)
A 		83.3
(1.9)
A 		34.7
(-3)
A 		60
B 97.3
(3)
P 		67.9
(-3)
A 		77.7
(-1)
A 		97.3
(3)
A 		29
C 120
(3)
A 		104.2
(1.6)
A 		52.4
(-3)
A 		71.9
(-1.3)
A 		68
avr 104
(3) 		77
(-1.5) 		71.1
(-2.5) 		68
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 83.2
(3)
A 		42
(-0.4)
A 		65.3
(1.5)
A 		28.1
(-1.5)
A 		10.1
(-3)
A 		61.2
(1.2)
A 		73
B 48.6
(-0.3)
P 		84.1
(3)
A 		19.4
(-3)
A 		31.9
(-1.8)
A 		78.6
(2.5)
A 		78.9
(2.5)
A 		65
C 97.2
(3)
A 		64.7
(0.3)
A 		53.3
(-0.6)
A 		37
(-2)
A 		24.8
(-3)
A 		92.7
(2.6)
M 		72
avr 76.3
(2.8) 		63.6
(1.1) 		46
(-1.2) 		32.3
(-3) 		37.8
(-2.3) 		77.6
(3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 34.5
(3)
A 		12.8
(-1.4)
A 		21.8
(0.4)
A 		5.1
(-3)
A 		29
B 31
(3)
P 		16.8
(-3)
A 		18
(-2.5)
A 		20.7
(-1.4)
A 		14
C 39.7
(3)
A 		30
(0.9)
A 		18.3
(-1.7)
A 		12.1
(-3)
A 		28
avr 35.1
(3) 		19.9
(-1.1) 		19.4
(-1.2) 		12.6
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 15.3
(3)
A 		15
(2.9)
A 		14.2
(2.5)
A 		7.1
(-1)
A 		3
(-3)
A 		14.9
(2.8)
A 		12
B 16.9
(-0.3)
P 		28
(2.1)
A 		4.7
(-3)
A 		8.5
(-2.2)
A 		31.9
(3)
A 		29.4
(2.4)
A 		27
C 36
(3)
A 		19.7
(-0.4)
A 		13.6
(-1.7)
A 		7.4
(-3)
A 		8
(-2.9)
A 		31
(2)
M 		29
avr 22.7
(2.2) 		20.9
(1.6) 		10.8
(-1.9) 		7.7
(-3) 		14.3
(-0.7) 		25.1
(3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3839
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.28 NCBI
Target Description Y57A10A.28 /REP_DB=WormBase Gene ID /WP=CE22604 /TR=Q9NA73 /GB=CAB55033.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064205 NCBI Caenorhabditis elegans Y57A10A.28 (Y57A10A.28) mRNA, complete cds. 11/11 None
SNAP00000026035 ENSEMBL cdna:SNAP chromosome:CEL140:II:12269902:12279282:-1 11/11 None
GENEFINDER00000026045 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12276332:12279282:-1 11/11 None
Y57A10A.28 ENSEMBL cdna:known chromosome:CEL140:II:12276332:12279282:-1 gene:Y57A10A.28 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12276328-12279279(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.28
Entrez Gene 190342 Entrez gene
SwissProt Q9NA73 EMBL-EBI
WormBase CE35686 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1639722_S_AT dm
DROSGENOME1:152973_AT dm
Protein Similarities
Method ID Description E-Value
blast CAB60768 Hypothetical protein Y57A10A.27 [Caenorhabditis elegans] ref|NP_496605.1| Y57A10A.27 [Caenorhabditis elegans] 0.0
blast T31649 hypothetical protein Y57A10A.bb - Caenorhabditis elegans 0.0
blast CAB55033 Hypothetical protein Y57A10A.28 [Caenorhabditis elegans] ref|NP_496606.2| Y57A10A.28 [Caenorhabditis elegans] 1.0E-163
blast CAB55033 Hypothetical protein Y57A10A.28 [Caenorhabditis elegans] ref|NP_496606.2| Y57A10A.28 [Caenorhabditis elegans] 1.0E-157
blast CAB55033 Hypothetical protein Y57A10A.28 [Caenorhabditis elegans] ref|NP_496606.2| Y57A10A.28 [Caenorhabditis elegans] 1.0E-146
blast CAE73477 Hypothetical protein CBG20929 [Caenorhabditis briggsae] 1.0E-146
blast CAE73477 Hypothetical protein CBG20929 [Caenorhabditis briggsae] 1.0E-144
blast CAE73481 Hypothetical protein CBG20933 [Caenorhabditis briggsae] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR007866 EMBL-EBI Protein of unknown function DUF714 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496606.2 3 60-82,95-117,219-241
Y57A10A.28 3 60-82,95-117,219-241
SNAP00000026035 2 60-82,95-117
GENEFINDER00000026045 3 60-82,95-117,219-241
Sequence
Target Sequence 
>C. ELEGANS:187157_AT
gtcaggatctacccagagtcttatttggtgcaaattcttgttggagtcgcgaaaggagcc
ggctcaggcgttgtaaagatcgttgagcaactggcacgtggcacatggcacccgacgaat
catgaaattcttcggccatcgtttaccacaaaagcgtgtgttatagcgtctattgtgttc
actttggaacggcatagtatgtatgttacggcgccacacgatttggtgtacttgtgcgtc
gtcggattcttcatctacttcaagctggcttctctgtgtctctccgtacatgatgttctg
atgcctattgagaatgttctttgtgcagtttttatgggcggaattatcgatgcttttgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAGGATCTACCCAGAGTCTTATT 407 465 448 Antisense
TGGAGTCGCGAAAGGAGCCGGCTCA 131 549 489 Antisense
GTTGAGCAACTGGCACGTGGCACAT 321 437 529 Antisense
GCACATGGCACCCGACGAATCATGA 57 317 548 Antisense
ATCATGAAATTCTTCGGCCATCGTT 149 29 566 Antisense
GGCCATCGTTTACCACAAAAGCGTG 511 541 581 Antisense
TATAGCGTCTATTGTGTTCACTTTG 74 661 609 Antisense
TACGGCGCCACACGATTTGGTGTAC 623 647 654 Antisense
TACTTCAAGCTGGCTTCTCTGTGTC 519 645 703 Antisense
GTCTCTCCGTACATGATGTTCTGAT 190 471 725 Antisense
GGGCGGAATTATCGATGCTTTTGCA 237 493 783 Antisense
Sequence Source Affymetrix Proprietary Database