[Home] | [Total List]

[187156_at]

Description Y45G12C.1 /REP_DB=WormBase Gene ID /WP=CE21936 /TR=Q9N4X7 /GB=AAF60579.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1644
1 2 3 4 range
A 130.3
(-3)
M 		316.1
(-2.3)
M 		327
(-2.3)
P 		1704.5
(3)
P 		1574
B 135.8
(-3)
A 		257.5
(-2.6)
M 		319.2
(-2.3)
P 		1774
(3)
P 		1638
C 165.8
(-3)
M 		326.8
(-2.3)
A 		341.2
(-2.2)
P 		1512.2
(3)
P 		1346
avr 144
(-3) 		300.1
(-2.4) 		329.1
(-2.3) 		1663.6
(3) 		1520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 377
1 2 3 4 5 6 range
A 243.7
(-0.4)
A 		160
(-2.1)
A 		114.4
(-3)
A 		244.4
(-0.4)
M 		213.7
(-1)
M 		418
(3)
P 		304
B 112
(-3)
P 		129.3
(-2.7)
A 		155.6
(-2.3)
A 		166.7
(-2.1)
A 		240.9
(-0.8)
A 		469.3
(3)
P 		357
C 108.5
(-3)
A 		143.5
(-2.4)
M 		131.8
(-2.6)
A 		196.8
(-1.6)
A 		180.2
(-1.9)
A 		485.1
(3)
P 		377
avr 154.7
(-2.6) 		144.3
(-2.8) 		133.9
(-3) 		202.6
(-1.7) 		211.6
(-1.6) 		457.5
(3) 		324
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 335
1 2 3 4 range
A 47.5
(-3)
M 		68.6
(-2.4)
M 		85.5
(-1.9)
P 		249.5
(3)
P 		202
B 43.3
(-3)
A 		63.6
(-2.6)
M 		74
(-2.4)
P 		378
(3)
P 		335
C 54.9
(-3)
M 		94
(-1.8)
A 		118.9
(-1.1)
P 		255
(3)
P 		200
avr 48.6
(-3) 		75.4
(-2.3) 		92.8
(-1.9) 		294.2
(3) 		246

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 150
1 2 3 4 5 6 range
A 44.9
(-1.4)
A 		56.9
(-0.5)
A 		24.9
(-3)
A 		62
(-0.1)
M 		64.5
(0.1)
M 		101.8
(3)
P 		77
B 39
(-2.9)
P 		43
(-2.8)
A 		37.8
(-3)
A 		44.1
(-2.7)
A 		97.9
(-0.4)
A 		175
(3)
P 		137
C 40.2
(-2.7)
A 		43.8
(-2.5)
M 		33.5
(-3)
A 		39.6
(-2.7)
A 		58.3
(-1.8)
A 		162.4
(3)
P 		129
avr 41.4
(-2.5) 		47.9
(-2.2) 		32.1
(-3) 		48.6
(-2.1) 		73.6
(-0.8) 		146.4
(3) 		114
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15902
Sequence Type Exemplar sequence
Representative Public ID Y45G12C.1 NCBI
Target Description Y45G12C.1 /REP_DB=WormBase Gene ID /WP=CE21936 /TR=Q9N4X7 /GB=AAF60579.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071301(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071301 NCBI Caenorhabditis elegans Y45G12C.1 (Y45G12C.1) mRNA, complete cds. 11/11 None
GENEFINDER00000043329 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2565563:2568593:1 11/11 None
Y45G12C.1 ENSEMBL cdna:known chromosome:CEL140:V:2565512:2568603:1 gene:Y45G12C.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043319 4/11 Cross Hyb Matching Probes None
SNAP00000043320 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2565511-2568593(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45G12C.1
Entrez Gene 189931 Entrez gene
SwissProt Q9N4X7 EMBL-EBI
WormBase CE21936 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503702 Y45G12C.1 [Caenorhabditis elegans] gb|AAF60579.1| Hypothetical protein Y45G12C.1 [Caenorhabditis elegans] 0.0
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 1.0E-153
blast CAB03854 Hypothetical protein C06B8.2a [Caenorhabditis elegans] emb|CAB03409.4| Hypothetical protein C06B8.2a [Caenorhabditis elegans] ref|NP_506852.2| C06B8.2a [Caenorhabditis elegans] 1.0E-139
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 1.0E-138
blast CAB03854 Hypothetical protein C06B8.2a [Caenorhabditis elegans] emb|CAB03409.4| Hypothetical protein C06B8.2a [Caenorhabditis elegans] ref|NP_506852.2| C06B8.2a [Caenorhabditis elegans] 1.0E-125
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503702.1 1 22-39
Y45G12C.1 1 22-39
GENEFINDER00000043329 1 5-22
Sequence
Target Sequence 
>C. ELEGANS:187156_AT
gatggagtaccggttcaaggcactaattttggcggaagctattcgagattttcaaaatgt
ttggtggattgatgcacatacaaaatggttccacccaaagccattggataccatttatga
aaatttggctgaatgtgtgaatgatgctgcttgtgagaagaaatcctcaatccagatgtt
cattaattcgacacacagtaactacgccgtccttaacagaggacttttggactattttcc
aacttttgatatagatgatttgaagtccaatgaaaaaagcctacaattatctgcaatgct
ggtttatttagcgagaactcagtttacgttagatattctgaaatggcacacactctgcgc
tctcgaagaaaagtgtatgaagccgcctggagcaaaactgaagtgtgacaccatccctga
atggaatcattatgcaggatgcttccgatacgatcaatcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGAGTACCGGTTCAAGGCACTA 59 405 606 Antisense
AAGGCACTAATTTTGGCGGAAGCTA 497 161 622 Antisense
GGTTCCACCCAAAGCCATTGGATAC 296 507 692 Antisense
GAATGTGTGAATGATGCTGCTTGTG 252 333 736 Antisense
GAAGAAATCCTCAATCCAGATGTTC 82 341 762 Antisense
ACAGTAACTACGCCGTCCTTAACAG 360 67 800 Antisense
TCTGAAATGGCACACACTCTGCGCT 239 609 942 Antisense
ACACTCTGCGCTCTCGAAGAAAAGT 111 111 955 Antisense
AAGTGTATGAAGCCGCCTGGAGCAA 556 157 976 Antisense
TGAAGTGTGACACCATCCCTGAATG 336 575 1004 Antisense
GGATGCTTCCGATACGATCAATCAT 534 513 1042 Antisense
Sequence Source Affymetrix Proprietary Database