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[187154_at]

Description Y62E10A.14 /REP_DB=WormBase Gene ID /WP=CE22704 /TR=Q9U1X3 /GB=CAB60601.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 54.8
(0)
A 		42.4
(-3)
A 		66.9
(3)
A 		66.5
(2.9)
A 		25
B 54.1
(-0.2)
A 		8.1
(-3)
A 		35
(-1.4)
A 		106.1
(3)
M 		98
C 11.5
(-3)
A 		42.2
(-1.7)
A 		50.8
(-1.4)
A 		155.4
(3)
P 		144
avr 40.1
(-2.3) 		30.9
(-3) 		50.9
(-1.5) 		109.3
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 4.5
(-3)
A 		41.9
(-2.5)
A 		51.6
(-2.4)
A 		57.3
(-2.4)
A 		289.9
(0.4)
P 		501.7
(3)
P 		497
B 7.9
(-2.9)
A 		27
(-2.8)
A 		2.2
(-3)
A 		117.3
(-1.9)
A 		398
(0.7)
P 		648.2
(3)
P 		646
C 38.5
(-2.8)
A 		32
(-2.9)
A 		19.6
(-3)
A 		109.1
(-2)
A 		412.4
(1.6)
P 		532.3
(3)
P 		513
avr 17
(-3) 		33.6
(-2.8) 		24.5
(-2.9) 		94.6
(-2.1) 		366.8
(0.9) 		560.7
(3) 		544
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 19.9
(3)
A 		9.2
(-3)
A 		17.5
(1.7)
A 		9.7
(-2.7)
A 		11
B 17.3
(1.5)
A 		2
(-3)
A 		8.1
(-1.2)
A 		22.6
(3)
M 		21
C 3.8
(-3)
A 		12.1
(-0.8)
A 		17.7
(0.7)
A 		26.2
(3)
P 		22
avr 13.7
(0) 		7.8
(-3) 		14.4
(0.4) 		19.5
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 241
1 2 3 4 5 6 range
A 0.8
(-3)
A 		14.9
(-2.3)
A 		11.2
(-2.5)
A 		14.5
(-2.3)
A 		87.5
(1.3)
P 		122.2
(3)
P 		121
B 2.7
(-2.9)
A 		9
(-2.8)
A 		0.5
(-3)
A 		31.1
(-2.2)
A 		161.7
(1)
P 		241.7
(3)
P 		241
C 14.3
(-2.7)
A 		9.8
(-2.8)
A 		5
(-3)
A 		21.9
(-2.4)
A 		133.5
(1.5)
P 		178.2
(3)
P 		173
avr 5.9
(-3) 		11.2
(-2.8) 		5.6
(-3) 		22.5
(-2.4) 		127.6
(1.2) 		180.7
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9786
Sequence Type Exemplar sequence
Representative Public ID Y62E10A.14 NCBI
Target Description Y62E10A.14 /REP_DB=WormBase Gene ID /WP=CE22704 /TR=Q9U1X3 /GB=CAB60601.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070182(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070182 NCBI Caenorhabditis elegans Y62E10A.14 (Y62E10A.14) mRNA, complete cds. 11/11 None
SNAP00000008083 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13399295:13403698:-1 11/11 None
GENEFINDER00000008089 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13399295:13400474:-1 11/11 None
Y62E10A.14 ENSEMBL cdna:known chromosome:CEL140:IV:13399295:13400477:-1 gene:Y62E10A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13399300-13400480(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y62E10A.14
Entrez Gene 178305 Entrez gene
SwissProt Q9U1X3 EMBL-EBI
WormBase CE22704 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60601 Hypothetical protein Y62E10A.14 [Caenorhabditis elegans] ref|NP_502583.1| Y62E10A.14 [Caenorhabditis elegans] 0.0
blast CAB07219 Hypothetical protein H02I12.5 [Caenorhabditis elegans] ref|NP_502151.1| H02I12.5 [Caenorhabditis elegans] 1.0E-165
blast NP_500636 Y17G9B.9 [Caenorhabditis elegans] gb|AAF60450.1| Hypothetical protein Y17G9B.9 [Caenorhabditis elegans] 1.0E-163
Sequence
Target Sequence 
>C. ELEGANS:187154_AT
gcatgctgttggtcgaggatatctccagtttgattctgacttccttcctggccgagccga
aagagacgggtcaaaatgtggttcgattcgcgatccaggcaacgactgaaatgccattcc
atctattgtttgctatgctcgaacaactggagatggaaaacgaaggattccagatgacag
acagctttgtggtggcaacgttgaaccgatcacagggcagaactaccactcgtcacctgc
gaaccacaaactgccgggaatacggaaatctcgagccaggactcgattcacaaggccgac
tgatggcctcgactgcatcaatcacgtgttctatccgaggaaagcgccacgtggaaacga
ggatcgtgtacaataacaactcgaacgccaggaatacttcagggagaagtagatacatcg
aattggagcaaacagtgaagtgcaagaaccgacgtgtgctgattgtcgaagatccagtcg
aaatccacgaatttgagatcgaaaaggacatgatcccgctgggaaagggaattgtgccag
tcgaggacctgatcacgttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGCTGTTGGTCGAGGATATCTC 83 311 455 Antisense
TTCGCGATCCAGGCAACGACTGAAA 514 695 541 Antisense
ATGCCATTCCATCTATTGTTTGCTA 308 41 565 Antisense
GGCAACGTTGAACCGATCACAGGGC 708 533 648 Antisense
TCACAGGGCAGAACTACCACTCGTC 178 629 664 Antisense
ATCAATCACGTGTTCTATCCGAGGA 644 25 771 Antisense
AACTCGAACGCCAGGAATACTTCAG 31 141 832 Antisense
GCAAGAACCGACGTGTGCTGATTGT 323 319 896 Antisense
GAAAAGGACATGATCCCGCTGGGAA 170 353 955 Antisense
GAAAGGGAATTGTGCCAGTCGAGGA 429 351 977 Antisense
CAGTCGAGGACCTGATCACGTTCCT 477 205 992 Antisense
Sequence Source Affymetrix Proprietary Database