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[187152_at]

Description Y110A7A.9 /REP_DB=WormBase Gene ID /WP=CE28105 /TR=Q9N594 /GB=AAF60426.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 75      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 73      6grp_total > 75      4grp_total > 62      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 308
1 2 3 4 range
A 671.8
(3)
P 		554.2
(0.3)
P 		514.2
(-0.6)
P 		409.2
(-3)
P 		263
B 572.9
(3)
P 		423.8
(-2.1)
P 		495.2
(0.3)
P 		397.3
(-3)
P 		176
C 629.1
(3)
P 		471.4
(-0.6)
P 		538.1
(0.9)
P 		364.2
(-3)
P 		265
avr 624.6
(3) 		483.1
(-0.6) 		515.8
(0.2) 		390.2
(-3) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 479.6
(-3)
P 		514.9
(-2)
P 		512.4
(-2.1)
P 		698
(3)
P 		594.3
(0.2)
P 		667.1
(2.2)
P 		218
B 534.9
(-3)
P 		639.8
(0.9)
P 		637.9
(0.9)
P 		614.2
(-0)
P 		568.4
(-1.7)
P 		695.4
(3)
P 		161
C 522.1
(-3)
P 		581.9
(-1.1)
P 		604.9
(-0.3)
P 		629.4
(0.5)
P 		566.8
(-1.5)
P 		706.8
(3)
P 		185
avr 512.2
(-3) 		578.9
(-0.7) 		585.1
(-0.5) 		647.2
(1.6) 		576.5
(-0.8) 		689.8
(3) 		178
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 185
1 2 3 4 range
A 244.6
(3)
P 		120.3
(-1)
P 		134.4
(-0.6)
P 		59.9
(-3)
P 		185
B 182.7
(3)
P 		104.7
(-1.8)
P 		114.7
(-1.2)
P 		84.7
(-3)
P 		98
C 208.3
(3)
P 		135.5
(0)
P 		187.5
(2.2)
P 		61.4
(-3)
P 		147
avr 211.9
(3) 		120.2
(-0.8) 		145.5
(0.2) 		68.7
(-3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 88.4
(-3)
P 		183.1
(3)
P 		111.6
(-1.5)
P 		177
(2.6)
P 		179.3
(2.8)
P 		162.4
(1.7)
P 		95
B 186.1
(-1.2)
P 		212.9
(0.3)
P 		154.9
(-3)
P 		162.7
(-2.6)
P 		230.9
(1.4)
P 		259.3
(3)
P 		104
C 193.5
(0.6)
P 		177.5
(-0.2)
P 		153.9
(-1.5)
P 		126.6
(-3)
P 		183.4
(0.1)
P 		236.6
(3)
P 		110
avr 156
(-1.8) 		191.2
(0.9) 		140.1
(-3) 		155.4
(-1.8) 		197.9
(1.4) 		219.4
(3) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1756
Sequence Type Exemplar sequence
Representative Public ID Y110A7A.9 NCBI
Target Description Y110A7A.9 /REP_DB=WormBase Gene ID /WP=CE28105 /TR=Q9N594 /GB=AAF60426.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026547(11), NM_001026548(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026547 NCBI Caenorhabditis elegans Y110A7A.9a (Y110A7A.9) mRNA, complete cds. 11/11 None
NM_001026548 NCBI Caenorhabditis elegans Y110A7A.9b (Y110A7A.9) mRNA, complete cds. 11/11 None
SNAP00000029208 ENSEMBL cdna:SNAP chromosome:CEL140:I:5119265:5123856:1 11/11 None
GENEFINDER00000029231 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5119265:5123856:1 11/11 None
Y110A7A.9a ENSEMBL cdna:known chromosome:CEL140:I:5119226:5123988:1 gene:Y110A7A.9 11/11 None
Y110A7A.9b ENSEMBL cdna:known chromosome:CEL140:I:5119664:5123856:1 gene:Y110A7A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5119264-5123856(+) 99.84 100.0
Public Domain and Genome References
Ensembl Y110A7A.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60426 Hypothetical protein Y110A7A.9a [Caenorhabditis elegans] ref|NP_001021718.1| Y110A7A.9a [Caenorhabditis elegans] 0.0
blast CAE65741 Hypothetical protein CBG10826 [Caenorhabditis briggsae] 0.0
blast AAT81173 Hypothetical protein Y110A7A.9b [Caenorhabditis elegans] ref|NP_001021719.1| Y110A7A.9b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:187152_AT
gagttatcagtgtagcgtgtgcagctgaacaagcaatggaaaggagattagtcgaacaag
ctgtagttgttggaggatctgcaaaggaaagagtcaccgatcgattgattgtttctgcag
atcttcggtacgcaagcatcaaagcagcgttgctagtctcttgtcaggataacgaaaaag
caaaatctctgataaagctcatcgctacaaatttgattgcatccgatttgattgaagacg
gagttgaactattgttcttggtcggagctggtggagatgcttgcaagtatctacaatcac
agaaattatggacgaaaagtattgtatatgcaaagatgggattggacgatcctactgaag
tcgagtcaaaatggatcggacaccttgccgacgaggctaaacaaattcgtgttttagccg
aagcatctcgtcgtaattggcccgacgttgttgaagcgacatcctctgctgatgctattc
tagctcgattgattctacgaacaaccacatccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTATCAGTGTAGCGTGTGCAGC 514 397 2540 Antisense
GAGTCACCGATCGATTGATTGTTTC 523 399 2630 Antisense
GCAGATCTTCGGTACGCAAGCATCA 31 313 2656 Antisense
AAAGCAGCGTTGCTAGTCTCTTGTC 541 123 2680 Antisense
ACTATTGTTCTTGGTCGGAGCTGGT 593 101 2787 Antisense
GGACGATCCTACTGAAGTCGAGTCA 73 523 2883 Antisense
GACACCTTGCCGACGAGGCTAAACA 640 367 2918 Antisense
CGAAGCATCTCGTCGTAATTGGCCC 290 253 2958 Antisense
ATTGGCCCGACGTTGTTGAAGCGAC 630 1 2975 Antisense
GACATCCTCTGCTGATGCTATTCTA 591 369 2997 Antisense
TGATTCTACGAACAACCACATCCAC 369 563 3029 Antisense
Sequence Source Affymetrix Proprietary Database