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[187150_at]

Description Y113G7B.12 /REP_DB=WormBase Gene ID /WP=CE23293 /TR=Q9NAL5 /GB=CAB76739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 10      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 91.6
(-1.9)
A 		82
(-3)
A 		132.5
(3)
A 		89.1
(-2.2)
A 		51
B 98.9
(-0.9)
A 		129.2
(3)
A 		122.3
(2.1)
A 		82.4
(-3)
A 		47
C 92.3
(1.5)
A 		97.1
(3)
A 		78.5
(-3)
A 		81.6
(-2)
A 		19
avr 94.3
(-0.8) 		102.8
(1.1) 		111.1
(3) 		84.4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 61
(-3)
A 		125.4
(3)
A 		97.2
(0.4)
A 		77.9
(-1.4)
A 		78.4
(-1.4)
A 		97.3
(0.4)
A 		64
B 81.9
(-2.7)
A 		149.2
(3)
M 		138.1
(2.1)
P 		99.4
(-1.2)
A 		78.4
(-3)
A 		97.2
(-1.4)
A 		71
C 84
(-0.9)
A 		129
(2.3)
A 		138.4
(3)
A 		54.6
(-3)
A 		70.9
(-1.8)
A 		93.9
(-0.2)
M 		84
avr 75.6
(-3) 		134.5
(3) 		124.6
(2) 		77.3
(-2.8) 		75.9
(-3) 		96.1
(-0.9) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 33.4
(2.7)
A 		17.8
(-1.7)
A 		34.6
(3)
A 		13
(-3)
A 		22
B 31.5
(2.8)
A 		31.9
(3)
A 		28.3
(1.5)
A 		17.6
(-3)
A 		14
C 30.6
(3)
A 		27.9
(2)
A 		27.4
(1.9)
A 		13.8
(-3)
A 		17
avr 31.8
(3) 		25.9
(0.9) 		30.1
(2.4) 		14.8
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.2
(-3)
A 		44.6
(3)
A 		21.2
(-1.2)
A 		19.8
(-1.5)
A 		23.7
(-0.8)
A 		23.7
(-0.8)
A 		33
B 28.5
(-2.4)
A 		49.7
(3)
M 		33.5
(-1.2)
P 		26.3
(-3)
A 		31.9
(-1.6)
A 		36.2
(-0.5)
A 		23
C 31.1
(1.2)
A 		39.4
(3)
A 		35.2
(2.1)
A 		11
(-3)
A 		22.9
(-0.5)
A 		31.4
(1.3)
M 		28
avr 23.6
(-1.9) 		44.6
(3) 		30
(-0.4) 		19
(-3) 		26.2
(-1.3) 		30.4
(-0.3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187150_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12918
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.12 NCBI
Target Description Y113G7B.12 /REP_DB=WormBase Gene ID /WP=CE23293 /TR=Q9NAL5 /GB=CAB76739.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075500(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075500 NCBI Caenorhabditis elegans Y113G7B.12 (Y113G7B.12) mRNA, complete cds. 11/11 None
GENEFINDER00000024727 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20206798:20213293:-1 11/11 None
Y113G7B.12 ENSEMBL cdna:known chromosome:CEL140:V:20206798:20210776:-1 gene:Y113G7B.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20206797-20210776(-) 95.08 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7B.12
Entrez Gene 190975 Entrez gene
SwissProt Q9NAL5 EMBL-EBI
WormBase CE23293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76739 Hypothetical protein Y113G7B.12 [Caenorhabditis elegans] ref|NP_507901.1| Y113G7B.12 [Caenorhabditis elegans] 0.0
blast CAB54332 Hypothetical protein Y113G7B.11 [Caenorhabditis elegans] ref|NP_507902.1| Y113G7B.11 [Caenorhabditis elegans] 3.0E-71
blast CAE61675 Hypothetical protein CBG05618 [Caenorhabditis briggsae] 2.0E-52
blast NP_508294 H02F09.4 [Caenorhabditis elegans] 2.0E-51
blast T25005 hypothetical protein T19C9.7 - Caenorhabditis elegans 3.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.4E-8
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 4.2E-13
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 4.4E-8
Pfam IPR005135 EMBL-EBI Endonuclease/exonuclease/phosphatase 5.7E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507901.1 1 12-31
Y113G7B.12 1 12-31
Sequence
Target Sequence 
>C. ELEGANS:187150_AT
aactactattttgatcctttcctgggagtaatggagaaagtaatttgtgactttcttcaa
aaagagaacgaacataaattcagccctagaacaaaagacccaactcattgcaaatatgaa
gagtatgtagaagctcataaacgagtcgacctcatccactttaagttgagtacggctttt
gataaagttccccacgaatttctgatttcaaagctcaacgatttcaacgttcatcccact
ttacgtaactggttcagaaaactcatgtccccaaaaactttttctgttcaagtaaatgac
catttggaatctgaaaaacataattgtcagataggagccccgcgaggcagtgaatctagg
cagttcatgtttctcgtatttatcaacagtcttttatgtgaaattccaattaacatttcg
tgttctgcgtgtgcaattagcgaagatcttgagatctattcccatgaacccattatgatt
gaaaaaagtcttagaaaaattgaggactggtccacttccaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTACTATTTTGATCCTTTCCTGG 214 139 2527 Antisense
CATAAACGAGTCGACCTCATCCACT 706 213 2662 Antisense
AGTTCCCCACGAATTTCTGATTTCA 559 63 2712 Antisense
CGTTCATCCCACTTTACGTAACTGG 515 245 2754 Antisense
GGTTCAGAAAACTCATGTCCCCAAA 394 449 2777 Antisense
TAATTGTCAGATAGGAGCCCCGCGA 602 633 2847 Antisense
GCCCCGCGAGGCAGTGAATCTAGGC 142 287 2863 Antisense
GCAGTTCATGTTTCTCGTATTTATC 140 313 2886 Antisense
AACATTTCGTGTTCTGCGTGTGCAA 196 139 2938 Antisense
TGAGATCTATTCCCATGAACCCATT 497 565 2976 Antisense
TTGAGGACTGGTCCACTTCCAACAA 451 701 3026 Antisense
Sequence Source Affymetrix Proprietary Database