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[187146_s_at]

Description Y56A3A.12B /REP_DB=WormBase Gene ID /WP=CE24468 /TR=Q9U217 /GB=CAB60525.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 60      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 81      6grp_total > 61      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 295.9
(-3)
P 		310.7
(-2.2)
P 		412.9
(3)
P 		368.8
(0.7)
P 		117
B 302.8
(-3)
P 		322.1
(-0.6)
P 		334.5
(1)
P 		350.3
(3)
P 		48
C 358.2
(-2.7)
P 		371.7
(-1.7)
P 		353.9
(-3)
P 		436.6
(3)
P 		83
avr 319
(-3) 		334.8
(-1.6) 		367.1
(1.4) 		385.2
(3) 		66

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 267.7
(-2.2)
P 		301.9
(0.4)
P 		275
(-1.7)
P 		337.2
(3)
P 		281.4
(-1.2)
P 		257.2
(-3)
P 		80
B 242.3
(-0.6)
P 		293.7
(1.9)
P 		299
(2.2)
P 		315.1
(3)
P 		234.2
(-1)
P 		194
(-3)
P 		121
C 278.9
(1.1)
P 		221.6
(-3)
P 		305.3
(3)
P 		271.1
(0.5)
P 		248.1
(-1.1)
P 		238.9
(-1.8)
P 		84
avr 263
(-0.5) 		272.4
(0.3) 		293.1
(1.9) 		307.8
(3) 		254.6
(-1.1) 		230
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 107.7
(3)
P 		67.4
(-1.5)
P 		107.9
(3)
P 		54
(-3)
P 		54
B 96.6
(3)
P 		79.5
(-1.7)
P 		77.5
(-2.2)
P 		74.6
(-3)
P 		22
C 118.6
(2.4)
P 		106.9
(1)
P 		123.4
(3)
P 		73.6
(-3)
P 		50
avr 107.6
(3) 		84.6
(-0.4) 		102.9
(2.3) 		67.4
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 49.4
(-3)
P 		107.4
(3)
P 		59.9
(-1.9)
P 		85.5
(0.7)
P 		84.9
(0.7)
P 		62.6
(-1.6)
P 		58
B 84.3
(-0.2)
P 		97.8
(3)
P 		72.6
(-2.9)
P 		83.5
(-0.4)
P 		95.2
(2.4)
P 		72.3
(-3)
P 		26
C 103.4
(3)
P 		67.6
(-1.4)
P 		77.7
(-0.2)
P 		54.5
(-3)
P 		80.3
(0.2)
P 		80
(0.1)
P 		49
avr 79
(-0.4) 		90.9
(3) 		70.1
(-3) 		74.5
(-1.7) 		86.8
(1.8) 		71.6
(-2.6) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187146_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7317
Sequence Type Exemplar sequence
Representative Public ID Y56A3A.12B NCBI
Target Description Y56A3A.12B /REP_DB=WormBase Gene ID /WP=CE24468 /TR=Q9U217 /GB=CAB60525.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067143(11), NM_067144(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067143 NCBI Caenorhabditis elegans Y56A3A.12b (Y56A3A.12) mRNA, complete cds. 11/11 None
NM_067144 NCBI Caenorhabditis elegans Y56A3A.12a (Y56A3A.12) mRNA, complete cds. 11/11 None
SNAP00000035194 ENSEMBL cdna:SNAP chromosome:CEL140:III:11894742:11906495:-1 10/11 None
GENEFINDER00000035221 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11899424:11906495:-1 11/11 None
Y56A3A.12b.1 ENSEMBL cdna:known chromosome:CEL140:III:11899217:11906785:-1 gene:Y56A3A.12 11/11 None
Y56A3A.12b.2 ENSEMBL cdna:known chromosome:CEL140:III:11899217:11906787:-1 gene:Y56A3A.12 11/11 None
Y56A3A.12a.2 ENSEMBL cdna:known chromosome:CEL140:III:11899424:11906785:-1 gene:Y56A3A.12 11/11 None
Y56A3A.12a.1 ENSEMBL cdna:known chromosome:CEL140:III:11899424:11907263:-1 gene:Y56A3A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11899419-11906749(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y56A3A.12
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60525 Hypothetical protein Y56A3A.12b [Caenorhabditis elegans] ref|NP_499544.1| Y56A3A.12b [Caenorhabditis elegans] 0.0
blast CAB60524 Hypothetical protein Y56A3A.12a [Caenorhabditis elegans] ref|NP_499545.1| Y56A3A.12a [Caenorhabditis elegans] 0.0
blast CAE67735 Hypothetical protein CBG13310 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 1.7E-56
Pfam IPR000120 EMBL-EBI Amidase 3.0E-7
Pfam IPR000120 EMBL-EBI Amidase 1.7E-56
Pfam IPR000120 EMBL-EBI Amidase 3.0E-7
Pfam IPR000120 EMBL-EBI Amidase 1.7E-56
Pfam IPR000120 EMBL-EBI Amidase 3.0E-7
Sequence
Target Sequence 
>C. ELEGANS:187146_S_AT
aaactttttggtcagcttcttgctccgatacggtgtgatgccatttgcaaagttggctct
ttcgaagaggctcgcttgtattggaagtgcttataattcggatttggcggcttgtcggca
gaatcaggagaacactgatagctataagctgcagtggattagatattggaagagcaagaa
aattgatgcattgatttgtccttcttttattactccagctcaaccgttcgaatatccggc
tcaactatcaaatggagcattcataaccggactattcaatatgcttgatgtcccagctgg
cgtcgttccagtttccccagtcaaccagaaagacgttgatcaattgattgatggattctc
taccgaaggagatttgcttctgaaaaagcaacgagaagctgctcgaggcaccaccgggtt
gccgaatgctgtacaggtcgtaactcttccgaattgtgaagaaatgtgccttcgtgtcat
gagacttgttgaagagtcggctgaaggtgttcaacgacttcagtggagagttggagcatc
ggcggctccgattgatgtggagaacacgccggctggagttgtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTTTTTGGTCAGCTTCTTGCTC 134 129 1236 Antisense
GCTCCGATACGGTGTGATGCCATTT 614 297 1257 Antisense
TTTGGCGGCTTGTCGGCAGAATCAG 361 663 1338 Antisense
GATGCATTGATTTGTCCTTCTTTTA 355 413 1420 Antisense
AGCTCAACCGTTCGAATATCCGGCT 148 79 1452 Antisense
CAATATGCTTGATGTCCCAGCTGGC 274 181 1512 Antisense
ACCACCGGGTTGCCGAATGCTGTAC 22 87 1645 Antisense
GCTGTACAGGTCGTAACTCTTCCGA 115 295 1663 Antisense
AATGTGCCTTCGTGTCATGAGACTT 578 163 1698 Antisense
GAGTTGGAGCATCGGCGGCTCCGAT 604 395 1763 Antisense
GAACACGCCGGCTGGAGTTGTGAGC 270 351 1797 Antisense
Sequence Source Affymetrix Proprietary Database