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[187145_at]

Description Y39A3CR.3 /REP_DB=WormBase Gene ID /WP=CE25260 /TR=Q9N407 /GB=AAF60528.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 46      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 88.5
(2.5)
A 		53.4
(-0.6)
A 		25.9
(-3)
A 		94.1
(3)
A 		68
B 105.8
(1.2)
P 		126.8
(3)
A 		57.1
(-3)
A 		73.1
(-1.6)
A 		70
C 64.5
(2.5)
A 		36.3
(-3)
A 		64.2
(2.4)
A 		67.2
(3)
A 		31
avr 86.3
(3) 		72.2
(0.7) 		49.1
(-3) 		78.1
(1.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 35.2
(3)
A 		27.2
(1.4)
A 		32.6
(2.5)
A 		19.4
(-0.2)
A 		5.8
(-3)
A 		21.6
(0.2)
A 		29
B 26.1
(-0.1)
A 		49.6
(3)
A 		13.5
(-1.7)
A 		13.5
(-1.7)
A 		3.5
(-3)
A 		30.9
(0.6)
A 		46
C 43.8
(0.1)
A 		15.1
(-3)
A 		53.6
(1.1)
A 		53.4
(1.1)
A 		21.7
(-2.3)
A 		70.9
(3)
A 		56
avr 35
(1.8) 		30.6
(1) 		33.2
(1.5) 		28.8
(0.6) 		10.3
(-3) 		41.1
(3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 32.2
(3)
A 		11.6
(-1.9)
A 		6.8
(-3)
A 		13.8
(-1.3)
A 		25
B 33.7
(3)
P 		31.3
(2.3)
A 		13.2
(-3)
A 		15.6
(-2.3)
A 		21
C 21.3
(2.4)
A 		10.5
(-3)
A 		22.4
(3)
A 		11.3
(-2.6)
A 		12
avr 29.1
(3) 		17.8
(-1.4) 		14.1
(-2.8) 		13.6
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 6.5
(0.6)
A 		9.7
(3)
A 		7.1
(1.1)
A 		4.9
(-0.6)
A 		1.7
(-3)
A 		5.2
(-0.4)
A 		8
B 9.1
(0.1)
A 		16.5
(3)
A 		3.3
(-2.2)
A 		3.6
(-2.1)
A 		1.4
(-3)
A 		11.5
(1)
A 		15
C 16.2
(0.6)
A 		4.6
(-3)
A 		13.6
(-0.2)
A 		10.7
(-1.1)
A 		7
(-2.2)
A 		23.7
(3)
A 		19
avr 10.6
(1.3) 		10.3
(1.1) 		8
(-0.3) 		6.4
(-1.2) 		3.4
(-3) 		13.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8169
Sequence Type Exemplar sequence
Representative Public ID Y39A3CR.3 NCBI
Target Description Y39A3CR.3 /REP_DB=WormBase Gene ID /WP=CE25260 /TR=Q9N407 /GB=AAF60528.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065067
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029613 ENSEMBL cdna:SNAP chromosome:CEL140:III:1860427:1878231:1 None
Y39A3CR.3 ENSEMBL cdna:known chromosome:CEL140:III:1860418:1877104:1 gene:Y39A3CR.3 A 
GENEFINDER00000029617 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:1860427:1876989:1 None
NM_065067 NCBI Caenorhabditis elegans Y39A3CR.3 (Y39A3CR.3) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:1861684-1867945(+) 96.93 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39A3CR.3
Entrez Gene 175332 Entrez gene
SwissProt Q9N407 EMBL-EBI
WormBase CE30711 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:17165_AT calmodulin-binding protein at
ATH1-121501:265243_AT calmodulin-binding protein at
CANINE:1594726_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFA.17869.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFA.19603.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
CANINE_2:CFAAFFX.26793.1.S1_S_AT similar to tetratricopeptide repeat domain 7B cfa
DROSOPHILA_2:1634331_AT dm
DROSGENOME1:142659_AT dm
CHICKEN:GGAAFFX.12795.1.S1_AT tetratricopeptide repeat domain 7B gga
CHICKEN:GGAAFFX.6751.1.S1_S_AT tetratricopeptide repeat domain 7B gga
CHICKEN:GGAAFFX.6751.2.S1_AT tetratricopeptide repeat domain 7B gga
HU35KSUBB:RC_H99675_AT tetratricopeptide repeat domain 7B hs
U133_X3P:HS.19762.0.S1_3P_AT tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:226152_AT tetratricopeptide repeat domain 7B hs
HG-U133B:226152_AT tetratricopeptide repeat domain 7B hs
HG-U95B:49345_AT tetratricopeptide repeat domain 7B hs
U133_X3P:HS2.370551.1.S1_3P_S_AT Tetratricopeptide repeat domain 7B hs
U133_X3P:HS2.249999.1.S1_3P_AT Tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:1556374_S_AT Tetratricopeptide repeat domain 7B hs
HG-U133_PLUS_2:1568722_AT Tetratricopeptide repeat domain 7B hs
HG-U95D:77633_AT Tetratricopeptide repeat domain 7B hs
HG-U95E:87596_AT Tetratricopeptide repeat domain 7B hs
MU11KSUBA:AA408451_RC_S_AT tetratricopeptide repeat domain 7B mm
MG-U74AV2:160777_AT tetratricopeptide repeat domain 7B mm
MOE430A:1433460_AT tetratricopeptide repeat domain 7B mm
MOUSE430A_2:1433460_AT tetratricopeptide repeat domain 7B mm
MOUSE430_2:1433460_AT tetratricopeptide repeat domain 7B mm
MOE430A:1456029_A_AT tetratricopeptide repeat domain 7B mm
MOUSE430A_2:1456029_A_AT tetratricopeptide repeat domain 7B mm
MOUSE430_2:1456029_A_AT tetratricopeptide repeat domain 7B mm
MG-U74CV2:130339_AT PREDICTED: tetratricopeptide repeat domain 7B [Mus musculus], mRNA sequence mm
RAE230A:1376035_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAT230_2:1376035_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAE230B:1378920_AT Tetratricopeptide repeat domain 7B (predicted) rn
RAT230_2:1378920_AT Tetratricopeptide repeat domain 7B (predicted) rn
RG-U34B:RC_AA901357_AT Tetratricopeptide repeat domain 7B (predicted) rn
RG-U34C:RC_AI228392_AT Tetratricopeptide repeat domain 7B (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAF60527 Hypothetical protein Y39A3CR.3 [Caenorhabditis elegans] ref|NP_497468.2| Y39A3CR.3 [Caenorhabditis elegans] 0.0
blast CAE69155 Hypothetical protein CBG15186 [Caenorhabditis briggsae] 0.0
blast AAF57269 CG8325-PA [Drosophila melanogaster] ref|NP_652063.1| CG8325-PA [Drosophila melanogaster] gb|AAD34768.1| unknown [Drosophila melanogaster] 5.0E-53
blast AAF57269 CG8325-PA [Drosophila melanogaster] ref|NP_652063.1| CG8325-PA [Drosophila melanogaster] gb|AAD34768.1| unknown [Drosophila melanogaster] 1.0E-46
Sequence
Target Sequence 
>C. ELEGANS:187145_AT
gaaggtctcatcaggcacagaaggcatcgaatggtaccgaaaaattatcacatgccttgg
tgataaattcactggcgaacggctcaaacagaagctctccagacaattcgcagagttgct
cattcgagcaactgtaccaattgaggaaaagtcgatgagcgaggcgatgcacacgaaagc
catgaatatgaaactctatcacggctcgaacaagacattctacactccgaaatcgaaaat
cgaggagattattcttcttttactgattaatgaagttctatcaacgcgggaagtgatatt
atcaagaacagatgatttatcgtcatcgcggacgccacaagtttttgatacagtgaaaaa
ttcgaattttccgccactcggatgctgcaagcagcgcgctccgctgaaaattgctcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGTCTCATCAGGCACAGAAGGC 409 335 660 Antisense
AATTCACTGGCGAACGGCTCAAACA 57 175 725 Antisense
CAGAAGCTCTCCAGACAATTCGCAG 13 205 748 Antisense
GCTCATTCGAGCAACTGTACCAATT 374 301 777 Antisense
GAGGCGATGCACACGAAAGCCATGA 135 407 820 Antisense
GAAACTCTATCACGGCTCGAACAAG 75 357 849 Antisense
AAGACATTCTACACTCCGAAATCGA 568 151 871 Antisense
ATCGCGGACGCCACAAGTTTTTGAT 95 37 984 Antisense
AATTCGAATTTTCCGCCACTCGGAT 612 175 1018 Antisense
GCCACTCGGATGCTGCAAGCAGCGC 383 279 1032 Antisense
GCGCTCCGCTGAAAATTGCTCAAAT 203 287 1055 Antisense
Sequence Source Affymetrix Proprietary Database