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[187144_at]

Description C41C4.6 /REP_DB=WormBase Gene ID /WP=CE01521 /TR=SW:Q09275 /GB=CAA88104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 37      4grp_highest_8_8 > 55      4grp_high_8_8 > 19      6grp_total > 27      4grp_total > 21      6grp_cgc > 06      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 159.2
(2.1)
P 		84.8
(-3)
P 		91.7
(-2.5)
P 		172.9
(3)
P 		88
B 110.2
(-1.2)
P 		126.6
(0.5)
P 		93.7
(-3)
P 		150
(3)
P 		56
C 129.9
(3)
P 		128.4
(2.8)
P 		92.8
(-3)
P 		129.8
(3)
P 		37
avr 133.1
(1.2) 		113.3
(-0.9) 		92.7
(-3) 		150.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 57.5
(-1.3)
P 		90.5
(3)
P 		64.2
(-0.4)
P 		44.2
(-3)
P 		49.2
(-2.4)
A 		86.5
(2.5)
P 		46
B 101.7
(3)
P 		56.7
(-2.6)
P 		75.7
(-0.2)
P 		53.1
(-3)
A 		56.9
(-2.5)
P 		77.3
(-0)
P 		49
C 112.2
(3)
P 		61.9
(-2.7)
P 		74.6
(-1.3)
P 		59.6
(-3)
P 		72.5
(-1.5)
A 		71.1
(-1.7)
P 		53
avr 90.5
(3) 		69.7
(-0.3) 		71.5
(0) 		52.3
(-3) 		59.5
(-1.9) 		78.3
(1.1) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 57.9
(3)
P 		18.4
(-3)
P 		24
(-2.1)
P 		25.3
(-2)
P 		40
B 35.2
(3)
P 		31.3
(1.3)
P 		21.7
(-3)
P 		32
(1.6)
P 		14
C 43
(3)
P 		36.9
(1.3)
P 		32.4
(-0)
P 		21.9
(-3)
P 		21
avr 45.4
(3) 		28.9
(-2.1) 		26
(-3) 		26.4
(-2.9) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 10.6
(-3)
P 		32.2
(3)
P 		14
(-2.1)
P 		11.2
(-2.8)
P 		14.8
(-1.8)
A 		21.1
(-0.1)
P 		22
B 35.4
(3)
P 		18.9
(-1.6)
P 		18.4
(-1.8)
P 		14.1
(-3)
A 		23.1
(-0.5)
P 		28.8
(1.1)
P 		21
C 41.6
(3)
P 		18.9
(-1.6)
P 		19
(-1.6)
P 		12
(-3)
P 		23.5
(-0.7)
A 		23.8
(-0.6)
P 		30
avr 29.2
(3) 		23.3
(0.9) 		17.1
(-1.3) 		12.4
(-3) 		20.5
(-0.1) 		24.6
(1.4) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3899
Sequence Type Exemplar sequence
Representative Public ID C41C4.6 NCBI
Target Description C41C4.6 /REP_DB=WormBase Gene ID /WP=CE01521 /TR=SW:Q09275 /GB=CAA88104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063302(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063302 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-4) (ulp-4) mRNA, complete cds. 11/11 None
SNAP00000036863 ENSEMBL cdna:SNAP chromosome:CEL140:II:8132229:8132975:1 10/11 None
GENEFINDER00000036874 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8129930:8132975:1 11/11 None
C41C4.6 ENSEMBL cdna:known chromosome:CEL140:II:8129881:8134644:1 gene:C41C4.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8129926-8134219(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-4
Ensembl C41C4.6
Entrez Gene 174307 Entrez gene
SwissProt Q09275 EMBL-EBI
WormBase CE01521 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAE57737 Hypothetical protein CBG00748 [Caenorhabditis briggsae] 0.0
blast CAA88104 Hypothetical protein C41C4.6 [Caenorhabditis elegans] ref|NP_495703.1| Ubiquitin-Like Protease family member (ulp-4) [Caenorhabditis elegans] sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 (Ubiquitin-like protease 4) 1.0E-179
blast CAA88104 Hypothetical protein C41C4.6 [Caenorhabditis elegans] ref|NP_495703.1| Ubiquitin-Like Protease family member (ulp-4) [Caenorhabditis elegans] sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 (Ubiquitin-like protease 4) 1.0E-170
blast CAE57737 Hypothetical protein CBG00748 [Caenorhabditis briggsae] 1.0E-157
blast CAE57737 Hypothetical protein CBG00748 [Caenorhabditis briggsae] 1.0E-121
blast CAA88104 Hypothetical protein C41C4.6 [Caenorhabditis elegans] ref|NP_495703.1| Ubiquitin-Like Protease family member (ulp-4) [Caenorhabditis elegans] sp|Q09275|ULP4_CAEEL Putative thiol protease ulp-4 (Ubiquitin-like protease 4) 1.0E-102
blast NP_172444 Ulp1 protease family protein [Arabidopsis thaliana] 2.0E-15
blast EAA11878 ENSANGP00000004517 [Anopheles gambiae str. PEST] ref|XP_315906.2| ENSANGP00000004517 [Anopheles gambiae str. PEST] 3.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.0E-61
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 1.4E-50
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.8E-62
Sequence
Target Sequence 
>C. ELEGANS:187144_AT
atttcggatttttgctgtctccaggagaaggatcttctcaacgatacgatgatcgacttc
tatttgaatcacattgttgaacacgtactaccagacagcaatggttcaaatgtcactgtt
cttccatcgatattttggcataatctttctttacggcagcacgcctttgattctgaagac
gagaagatgatgagtgatgagcaaaagatggatctcaaattcggcgatttgcatgatttc
gttgctgatttcgatctccaagattttgattacattgtggttcctgtaaacgagtgggag
cattggtcattggcagtcatatgtcatccgttcactgctcaagctcgcacggttatcttt
gattcgcagctcactgcggatcttaacaacctacagaacatggctacattaatcgaatca
ttcatgaagtattcatacgagaaacgtaccggaaatgctatgccttttccattgccgtgc
attttaccacaaagaatgcctcaacaaaccaacaatttcgactgtggtattttcattgca
gagtttgctagacgtttcttgctgagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGGATTTTTGCTGTCTCCAGG 276 17 415 Antisense
CAAATGTCACTGTTCTTCCATCGAT 458 193 521 Antisense
GCATAATCTTTCTTTACGGCAGCAC 302 307 552 Antisense
GCAGCACGCCTTTGATTCTGAAGAC 351 313 570 Antisense
TTTCGTTGCTGATTTCGATCTCCAA 456 671 651 Antisense
GTGGGAGCATTGGTCATTGGCAGTC 551 487 708 Antisense
TTGGCAGTCATATGTCATCCGTTCA 294 707 724 Antisense
GCTCGCACGGTTATCTTTGATTCGC 468 299 757 Antisense
AGCTCACTGCGGATCTTAACAACCT 332 79 782 Antisense
TTTCCATTGCCGTGCATTTTACCAC 68 669 880 Antisense
TTGCTAGACGTTTCTTGCTGAGCCC 563 703 959 Antisense
Sequence Source Affymetrix Proprietary Database