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[187143_s_at]

Description ZK637.12 /REP_DB=WormBase Gene ID /WP=CE18455 /TR=SW:P34658 /GB=CAA77461.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 57      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 81.9
(0.5)
P 		69.6
(-3)
A 		90.8
(3)
A 		82.7
(0.7)
A 		21
B 76
(0.6)
P 		97.9
(3)
A 		85.3
(1.6)
P 		43.5
(-3)
A 		54
C 55.4
(-1.9)
A 		55.8
(-1.8)
P 		48.9
(-3)
A 		82.9
(3)
A 		34
avr 71.1
(-1.4) 		74.4
(2.3) 		75
(3) 		69.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 197
1 2 3 4 5 6 range
A 91.7
(-1.3)
P 		36
(-3)
A 		84.2
(-1.5)
P 		74.2
(-1.8)
A 		125.6
(-0.3)
P 		233.4
(3)
P 		197
B 75.7
(-2)
P 		67.1
(-2.4)
M 		57.4
(-2.9)
A 		54.6
(-3)
A 		170.1
(2.4)
P 		183.2
(3)
P 		129
C 38.7
(-3)
A 		117.4
(-0.5)
M 		49.2
(-2.7)
A 		86
(-1.5)
A 		142.1
(0.3)
P 		225.7
(3)
P 		187
avr 68.7
(-2.8) 		73.5
(-2.6) 		63.6
(-3) 		71.6
(-2.7) 		145.9
(0.3) 		214.1
(3) 		151
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 29.8
(3)
P 		15.1
(-2)
A 		23.7
(0.9)
A 		12.1
(-3)
A 		18
B 24.2
(3)
P 		24.2
(3)
A 		19.8
(1.2)
P 		9.3
(-3)
A 		15
C 18.3
(3)
A 		16
(-0.2)
P 		17.1
(1.3)
A 		14
(-3)
A 		4
avr 24.1
(3) 		18.4
(0.2) 		20.2
(1.1) 		11.8
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 16.9
(-2.4)
P 		12.8
(-3)
A 		18.3
(-2.3)
P 		18.8
(-2.2)
A 		37.9
(0.4)
P 		56.8
(3)
P 		44
B 26.3
(-1.7)
P 		22.3
(-2.1)
M 		13.9
(-3)
A 		14.5
(-2.9)
A 		69.1
(3)
P 		68.3
(2.9)
P 		55
C 14.3
(-2.8)
A 		35.8
(-0.8)
M 		12.5
(-3)
A 		17.3
(-2.5)
A 		46
(0.2)
P 		75.6
(3)
P 		63
avr 19.2
(-2.5) 		23.6
(-2) 		14.9
(-3) 		16.9
(-2.8) 		51
(1.2) 		66.9
(3) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187143_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6207
Sequence Type Exemplar sequence
Representative Public ID ZK637.12 NCBI
Target Description ZK637.12 /REP_DB=WormBase Gene ID /WP=CE18455 /TR=SW:P34658 /GB=CAA77461.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066572(11), NM_066574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066572 NCBI Caenorhabditis elegans ZK637.15 (ZK637.15) mRNA, complete cds. 11/11 None
NM_066574 NCBI Caenorhabditis elegans ZK637.12 (ZK637.12) mRNA, complete cds. 11/11 A 
SNAP00000013211 ENSEMBL cdna:SNAP chromosome:CEL140:III:8920014:8921063:1 11/11 None
GENEFINDER00000013234 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8920014:8921063:1 10/11 None
ZK637.15 ENSEMBL cdna:known chromosome:CEL140:III:8920113:8921063:1 gene:ZK637.15 11/11 None
ZK637.12 ENSEMBL cdna:known chromosome:CEL140:III:8924178:8925160:1 gene:ZK637.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011215 3/11 Cross Hyb Matching Probes None
SNAP00000013213 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8924289-8925156(+) 100.0 100.0
chrIII:8920108-8921059(+) 98.6 98.6
Public Domain and Genome References
Gene Title

Ensembl ZK637.15
ZK637.12
Entrez Gene 176262 Entrez gene
191371 Entrez gene
SwissProt P34658 EMBL-EBI
Q23556 EMBL-EBI
WormBase CE18455 Wormbase
CE06640 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16515 Hypothetical protein Y57G11C.14 [Caenorhabditis elegans] ref|NP_502792.1| Y57G11C.14 [Caenorhabditis elegans] 9.0E-89
blast CAB16515 Hypothetical protein Y57G11C.14 [Caenorhabditis elegans] ref|NP_502792.1| Y57G11C.14 [Caenorhabditis elegans] 6.0E-88
blast CAA77457 Hypothetical protein ZK637.15 [Caenorhabditis elegans] ref|NP_498973.1| ZK637.15 [Caenorhabditis elegans] 5.0E-84
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 6.0E-83
blast CAA77457 Hypothetical protein ZK637.15 [Caenorhabditis elegans] ref|NP_498973.1| ZK637.15 [Caenorhabditis elegans] 2.0E-82
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 2.0E-79
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 8.0E-77
Sequence
Target Sequence 
>C. ELEGANS:187143_S_AT
ttgaagatgcaaatccccaagccggttgacaagaagccccgtccaccgccttcggaaaat
aacctgaagctgatttcgtgcgaggaaacatgcatggatgagacactgaaaaactcgtcg
aagccacgtatgatctacaataagcaactcggacgcgccgaatcgattgatttcgatgtt
ccgtccctgtcttacgagagttcggaaaagtgcgccggtgaaacgagtccgtatacttcg
gcgtcggtgtcgaattctaaaaaggcgacgtcttcctcgaatttcacaaagtcggagacc
actacaattactgagttgacaacttctacgttcaaaaaatctaataattcatcaggtggc
gctcttgttctggacaatcattacttgattaataatgacgatggaactgtgaagaaattg
ccaatgaaggtctatgtgaaacaacgtctcgaagatggatctcttgatgttcaacttgta
tttttcgacgaaaactcgcaaaaagtgatggatatctccatgcttgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAGATGCAAATCCCCAAGCCGG 35 703 67 Antisense
TCCACCGCCTTCGGAAAATAACCTG 277 589 108 Antisense
CCTGAAGCTGATTTCGTGCGAGGAA 177 265 129 Antisense
AACTCGTCGAAGCCACGTATGATCT 280 141 178 Antisense
TACAATAAGCAACTCGGACGCGCCG 581 627 202 Antisense
AACTCGGACGCGCCGAATCGATTGA 634 141 212 Antisense
TAATTCATCAGGTGGCGCTCTTGTT 355 635 411 Antisense
GCGCTCTTGTTCTGGACAATCATTA 530 287 425 Antisense
GGTCTATGTGAAACAACGTCTCGAA 445 503 495 Antisense
ACGTCTCGAAGATGGATCTCTTGAT 176 95 510 Antisense
GTGATGGATATCTCCATGCTTGTGA 513 483 571 Antisense
Sequence Source Affymetrix Proprietary Database