[Home] | [Total List]

[187142_at]

Description ZK637.12 /REP_DB=WormBase Gene ID /WP=CE18455 /TR=SW:P34658 /GB=CAA77461.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 98      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 3.6
(-3)
A 		4.6
(-2.8)
A 		4.7
(-2.8)
A 		42.7
(3)
A 		39
B 4
(-3)
A 		5.2
(-2.4)
A 		4.2
(-2.9)
A 		16.3
(3)
A 		12
C 3.6
(-2.9)
A 		5.6
(-2.7)
A 		2.8
(-3)
A 		66.3
(3)
A 		64
avr 3.7
(-3) 		5.1
(-2.8) 		3.9
(-3) 		41.8
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 16.6
(-1.7)
A 		5.9
(-2.8)
A 		8.3
(-2.6)
A 		4.3
(-3)
A 		57.9
(2.7)
A 		60.9
(3)
A 		57
B 3
(-3)
A 		8.6
(-2.4)
A 		4.8
(-2.8)
A 		5.9
(-2.7)
A 		58.6
(2.7)
A 		61.4
(3)
M 		58
C 2.5
(-2.9)
A 		1.5
(-3)
A 		4.1
(-2.7)
A 		10.8
(-2)
A 		25.3
(-0.5)
A 		59.3
(3)
A 		58
avr 7.4
(-2.8) 		5.3
(-3) 		5.7
(-3) 		7
(-2.8) 		47.3
(1.6) 		60.5
(3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.3
(-2.7)
A 		1
(-3)
A 		1.2
(-2.8)
A 		6.3
(3)
A 		5
B 1.3
(-2.3)
A 		1.3
(-2.3)
A 		1
(-3)
A 		3.5
(3)
A 		3
C 1.2
(-2.9)
A 		1.6
(-2.6)
A 		1
(-3)
A 		11.2
(3)
A 		10
avr 1.3
(-2.8) 		1.3
(-2.8) 		1.1
(-3) 		7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.1
(-2.3)
A 		2.1
(-2.6)
A 		1.8
(-2.7)
A 		1.1
(-3)
A 		17.5
(3)
A 		14.8
(2)
A 		16
B 1
(-3)
A 		2.9
(-2.5)
A 		1.2
(-2.9)
A 		1.6
(-2.8)
A 		23.8
(3)
A 		22.9
(2.8)
M 		23
C 0.9
(-2.9)
A 		0.5
(-3)
A 		1
(-2.8)
A 		2.2
(-2.5)
A 		8.2
(-0.6)
A 		19.9
(3)
A 		19
avr 1.7
(-2.9) 		1.8
(-2.8) 		1.3
(-3) 		1.6
(-2.9) 		16.5
(2.1) 		19.2
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187142_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6207
Sequence Type Exemplar sequence
Representative Public ID ZK637.12 NCBI
Target Description ZK637.12 /REP_DB=WormBase Gene ID /WP=CE18455 /TR=SW:P34658 /GB=CAA77461.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066574(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066574 NCBI Caenorhabditis elegans ZK637.12 (ZK637.12) mRNA, complete cds. 11/11 A 
ZK637.12 ENSEMBL cdna:known chromosome:CEL140:III:8924178:8925160:1 gene:ZK637.12 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000013211 2/11 Cross Hyb Matching Probes None
SNAP00000013213 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8924289-8925156(+) 100.0 100.0
chrIII:8920108-8921059(+) 98.6 98.6
Public Domain and Genome References
Gene Title
Ensembl ZK637.12
Entrez Gene 176262 Entrez gene
SwissProt P34658 EMBL-EBI
WormBase CE18455 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA77461 Hypothetical protein ZK637.12 [Caenorhabditis elegans] emb|CAA77475.1| Hypothetical protein ZK637.12 [Caenorhabditis elegans] ref|NP_498975.1| ZK637.12 [Caenorhabditis elegans] sp|P34658|YOUB_CAEEL Hypothetical protein ZK637.12 in chromosome III 6.0E-83
blast CAA77457 Hypothetical protein ZK637.15 [Caenorhabditis elegans] ref|NP_498973.1| ZK637.15 [Caenorhabditis elegans] 7.0E-71
blast CAB16515 Hypothetical protein Y57G11C.14 [Caenorhabditis elegans] ref|NP_502792.1| Y57G11C.14 [Caenorhabditis elegans] 7.0E-70
Sequence
Target Sequence 
>C. ELEGANS:187142_AT
gaggctcgacgcatggaggaggtccagcagttgaagatgcaaatccccaagccggttgac
aagaagccccgtccaccgccttcggaaaataacctgaagctgatttcgtgcgaggaaaca
tgcatggatgagacactgaaaaactcgtcgaagccacgtatgatctacaataagcaactc
ggacgcgccgaatcgattgatttcgatgttccgtccctgtcttacgagagttcggaaaag
tgcgccggtgaaacgagtccgtatacttcggcgtcggtgtcgaattctaaaaaggcgacg
tcttcctcgaatttcacaaagtcggagaccactacaattactgagttgacaacttctacg
tt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCTCGACGCATGGAGGAGGTCC 48 405 37 Antisense
GACGCATGGAGGAGGTCCAGCAGTT 157 381 44 Antisense
GAGAGTTCGGAAAAGTGCGCCGGTG 566 395 262 Antisense
AGTGCGCCGGTGAAACGAGTCCGTA 467 59 275 Antisense
AACGAGTCCGTATACTTCGGCGTCG 231 143 288 Antisense
ACTTCGGCGTCGGTGTCGAATTCTA 498 99 301 Antisense
TAAAAAGGCGACGTCTTCCTCGAAT 634 639 324 Antisense
GACGTCTTCCTCGAATTTCACAAAG 38 379 333 Antisense
GAATTTCACAAAGTCGGAGACCACT 329 325 345 Antisense
GTCGGAGACCACTACAATTACTGAG 233 471 357 Antisense
TTACTGAGTTGACAACTTCTACGTT 178 661 374 Antisense
Sequence Source Affymetrix Proprietary Database