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[187141_at]

Description F57B9.5 /REP_DB=WormBase Gene ID /WP=CE25013 /TR=SW:Q20932 /GB=AAA21176.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 39      4grp_highest_8_8 > 38      4grp_high_8_8 > 04      6grp_highest_nonorm > 77      6grp_total > 38      4grp_total > 05      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2466
1 2 3 4 range
A 2513.7
(0.3)
P 		1197.4
(-3)
P 		1235.8
(-2.9)
P 		3616.2
(3)
P 		2419
B 1771.1
(-1.5)
P 		1246.7
(-2.8)
P 		1150.1
(-3)
P 		3561.6
(3)
P 		2412
C 1895.2
(-0.6)
P 		1277.4
(-3)
P 		1264.3
(-3)
P 		2858.8
(3)
P 		1595
avr 2060
(-0.6) 		1240.5
(-2.9) 		1216.7
(-3) 		3345.5
(3) 		2129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 844
1 2 3 4 5 6 range
A 1797.1
(3)
P 		1368.7
(-0.2)
P 		986
(-3)
P 		1186.8
(-1.5)
P 		1262
(-1)
P 		1392.2
(0)
P 		811
B 1664.9
(3)
P 		1648.2
(2.8)
P 		1203
(-3)
P 		1296.4
(-1.8)
P 		1272.6
(-2.1)
P 		1518.2
(1.1)
P 		462
C 1813.6
(3)
P 		1429.9
(0.3)
P 		969.7
(-3)
P 		1195.3
(-1.4)
P 		1480
(0.6)
P 		1505.5
(0.8)
P 		844
avr 1758.5
(3) 		1482.3
(0.7) 		1052.9
(-3) 		1226.2
(-1.5) 		1338.2
(-0.6) 		1472
(0.6) 		706
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 655
1 2 3 4 range
A 915.2
(3)
P 		259.9
(-3)
P 		323.1
(-2.4)
P 		529.3
(-0.5)
P 		655
B 564.8
(0.6)
P 		307.9
(-2.5)
P 		266.5
(-3)
P 		759
(3)
P 		493
C 627.4
(3)
P 		367.3
(-3)
P 		440.7
(-1.3)
P 		482
(-0.4)
P 		260
avr 702.5
(3) 		311.7
(-3) 		343.4
(-2.5) 		590.1
(1.3) 		391

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 458
1 2 3 4 5 6 range
A 331.3
(-0.4)
P 		486.8
(3)
P 		214.7
(-3)
P 		301
(-1.1)
P 		380.8
(0.7)
P 		339
(-0.3)
P 		272
B 579.3
(3)
P 		548.6
(2.4)
P 		292.1
(-3)
P 		343.4
(-1.9)
P 		517
(1.7)
P 		566.1
(2.7)
P 		287
C 672.2
(3)
P 		436.3
(-0.3)
P 		246.8
(-2.9)
P 		240.4
(-3)
P 		478.9
(0.3)
P 		504
(0.7)
P 		432
avr 527.6
(3) 		490.6
(2.2) 		251.2
(-3) 		294.9
(-2.1) 		458.9
(1.5) 		469.7
(1.7) 		276
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7508
Sequence Type Exemplar sequence
Representative Public ID F57B9.5 NCBI
Target Description F57B9.5 /REP_DB=WormBase Gene ID /WP=CE25013 /TR=SW:Q20932 /GB=AAA21176.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066109(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066109 NCBI Caenorhabditis elegans mammalian BYstiN (adhesion protein) related family member (byn-1) (byn-1) mRNA, complete cds. 11/11 None
SNAP00000019897 ENSEMBL cdna:SNAP chromosome:CEL140:III:6931936:6935584:1 11/11 None
GENEFINDER00000019908 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:6931936:6933566:1 11/11 None
F57B9.5.2 ENSEMBL cdna:known chromosome:CEL140:III:6931930:6935780:1 gene:F57B9.5 11/11 A 
F57B9.5.1 ENSEMBL cdna:known chromosome:CEL140:III:6931932:6935793:1 gene:F57B9.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:6931934-6935583(+) 97.04 100.0
Public Domain and Genome References
Gene Title
Gene Symbol byn-1
Ensembl F57B9.5
Entrez Gene 175968 Entrez gene
SwissProt Q20932 EMBL-EBI
WormBase CE25013 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:246575_AT bystin family at
CANINE:1606088_AT similar to bystin cfa
CANINE_2:CFA.19708.1.S1_AT similar to bystin cfa
CANINE_2:CFAAFFX.3333.1.S1_S_AT similar to bystin cfa
DROSOPHILA_2:1640145_AT by S6 dm
DROSGENOME1:153812_AT by S6 dm
YEAST_2:1774721_AT Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis; localized in the nucleus and concentrated in the nucleolus Sc
Protein Similarities
Method ID Description E-Value
blast AAA21176 Mammalian bystin (adhesion protein) related protein 1 [Caenorhabditis elegans] ref|NP_498510.1| mammalian BYstiN (adhesion protein) related family member (byn-1) [Caenorhabditis elegans] sp|Q20932|BYN1_CAEEL Cell adhesion protein byn-1 0.0
blast CAE70047 Hypothetical protein CBG16479 [Caenorhabditis briggsae] 0.0
blast B88493 protein F57B9.5 [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007955 EMBL-EBI Bystin 1.0E-126
Pfam IPR007955 EMBL-EBI Bystin 1.0E-126
Pfam IPR007955 EMBL-EBI Bystin 1.9E-13
Sequence
Target Sequence 
>C. ELEGANS:187141_AT
tcatctgtatcaagccctctgcaaagctatctacaagcctgccgctttcttcaaaggatt
gattcttccattattagaatctggaacatgtacacttcgtgaagctgttatcttcagctc
tgtcctcaccaaagtcccgattccaatttttcattccgctgctgctatgcttaggattgc
cgaaatggaatacactggagctaattccgtgtttcttcgagctctcattgataagaagta
tgctttaccgtatcgtgcagtcgacggagtcgttaatcacttcattcgtctgaaaaccga
tgaacgagatatgccagttttgtggcatcagtgtcttttggcactgtgccagcgatacaa
gaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCTGTATCAAGCCCTCTGCAAA 519 621 828 Antisense
GCAAAGCTATCTACAAGCCTGCCGC 122 319 848 Antisense
GAAGCTGTTATCTTCAGCTCTGTCC 506 343 928 Antisense
CAAAGTCCCGATTCCAATTTTTCAT 42 193 957 Antisense
ATTCCGCTGCTGCTATGCTTAGGAT 229 7 980 Antisense
ACTGGAGCTAATTCCGTGTTTCTTC 27 97 1021 Antisense
GTGTTTCTTCGAGCTCTCATTGATA 383 485 1036 Antisense
GTATGCTTTACCGTATCGTGCAGTC 3 455 1065 Antisense
GAGTCGTTAATCACTTCATTCGTCT 502 399 1094 Antisense
TTTGTGGCATCAGTGTCTTTTGGCA 486 665 1146 Antisense
GGCACTGTGCCAGCGATACAAGAAC 369 535 1167 Antisense
Sequence Source Affymetrix Proprietary Database