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[187140_s_at]

Description C09B9.3 /REP_DB=WormBase Gene ID /WP=CE06795 /TR=SW:Q17851 /GB=AAB37559.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 32      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 18.9
(0.1)
A 		28.7
(3)
A 		10.5
(-2.3)
A 		8.1
(-3)
A 		21
B 6.9
(-3)
A 		10.4
(-2.5)
A 		26.6
(-0.4)
A 		52
(3)
A 		45
C 6.5
(-2.8)
A 		4.8
(-3)
A 		45.9
(3)
A 		12.5
(-1.9)
A 		41
avr 10.8
(-3) 		14.6
(-1.7) 		27.7
(3) 		24.2
(1.8) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 19.2
(-1.5)
A 		6.8
(-2.7)
A 		4.9
(-2.9)
A 		3.4
(-3)
A 		11.1
(-2.3)
A 		68.7
(3)
A 		65
B 5.8
(-2.1)
A 		3.1
(-3)
A 		20.9
(3)
A 		7.2
(-1.6)
A 		8.2
(-1.3)
A 		5.3
(-2.3)
A 		18
C 4.6
(-3)
A 		9.3
(3)
A 		8.8
(2.4)
A 		6.7
(-0.3)
A 		5.3
(-2.1)
A 		7
(0.1)
A 		5
avr 9.9
(-1.8) 		6.4
(-2.8) 		11.5
(-1.4) 		5.8
(-3) 		8.2
(-2.3) 		27
(3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.9
(3)
A 		6.2
(2.3)
A 		2.7
(-1.4)
A 		1.2
(-3)
A 		6
B 2.2
(-3)
A 		2.6
(-2.7)
A 		6.2
(-0.3)
A 		11.1
(3)
A 		9
C 2.1
(-2.7)
A 		1.4
(-3)
A 		16
(3)
A 		2.1
(-2.7)
A 		15
avr 3.7
(-2.6) 		3.4
(-3) 		8.3
(3) 		4.8
(-1.3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.5
(-2)
A 		2.4
(-2.4)
A 		1.1
(-2.9)
A 		0.9
(-3)
A 		3.4
(-2.1)
A 		16.7
(3)
A 		16
B 2
(-1.5)
A 		1
(-3)
A 		5.1
(3)
A 		1.9
(-1.7)
A 		3.4
(0.5)
A 		2
(-1.5)
A 		4
C 1.7
(-1.4)
A 		2.8
(3)
A 		2.2
(0.6)
A 		1.3
(-3)
A 		1.7
(-1.4)
A 		2.4
(1.4)
A 		2
avr 2.4
(-1.9) 		2.1
(-2.3) 		2.8
(-1.5) 		1.4
(-3) 		2.8
(-1.5) 		7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187140_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10799
Sequence Type Exemplar sequence
Representative Public ID C09B9.3 NCBI
Target Description C09B9.3 /REP_DB=WormBase Gene ID /WP=CE06795 /TR=SW:Q17851 /GB=AAB37559.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068305(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068305 NCBI Caenorhabditis elegans C09B9.3 (C09B9.3) mRNA, complete cds. 11/11 None
SNAP00000007225 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5021352:5025025:-1 11/11 None
GENEFINDER00000007233 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5021352:5025736:-1 11/11 None
C09B9.3 ENSEMBL cdna:known chromosome:CEL140:IV:5021178:5029007:-1 gene:C09B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5021357-5028627(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C09B9.3
Entrez Gene 177270 Entrez gene
SwissProt Q17851 EMBL-EBI
WormBase CE29571 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37559 Hypothetical protein C09B9.3 [Caenorhabditis elegans] ref|NP_500706.1| C09B9.3 [Caenorhabditis elegans] sp|Q17851|YAVK_CAEEL Hypothetical protein C09B9.3 in chromosome IV 0.0
blast T15468 hypothetical protein C09B9.3 - Caenorhabditis elegans 0.0
blast CAB07337 Hypothetical protein C37A5.1 [Caenorhabditis elegans] ref|NP_493472.1| C37A5.1 [Caenorhabditis elegans] 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500706.1 9 31-53,68-88,229-251,266-285,361-383,398-420,549-566,657-679,699-721
C09B9.3 9 31-53,68-88,229-251,266-285,361-383,398-420,549-566,657-679,699-721
GENEFINDER00000007233 5 32-54,69-91,220-237,328-350,370-392
Sequence
Target Sequence 
>C. ELEGANS:187140_S_AT
gacaacacatgcttactgatcctgaaattgataggacgattgattcgagcaattacataa
cttattacattccacttggaaatatattccaattcatttgtctgatgggatgggtgaaag
tttctgaagctcttctgaatccattaggagaagatgacgacgattttgaagtgaacttcc
tcattgacaggaatatttataccggaatggcgattgtcgatactgaatatgctgaatgcc
ctgctttgaaaaagaaaaatcttggaaaagaaaaaatagacgcgttcgagggagaacacg
cccgtccattttatccgcatggtatggatggaagcattggagacgccctagttggatctg
cacagaatatgaaatttgatgaccctcctgaaatgaaacaattttctgttaatattaccc
catcgaagccccgtccaactccattaaagccaaagaataaagaaggtgcacaaagaaaaa
tcagtaatgcttctacattcagtacatcaactttcaatgagtcaggttattcaactaata
aggcaggcgctttgggacctattcctattagttttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAACACATGCTTACTGATCCTGA 598 365 1826 Antisense
CATAACTTATTACATTCCACTTGGA 314 207 1881 Antisense
CTGAAGCTCTTCTGAATCCATTAGG 657 237 1949 Antisense
GAATATGCTGAATGCCCTGCTTTGA 10 327 2050 Antisense
CGCGTTCGAGGGAGAACACGCCCGT 546 201 2106 Antisense
CCCGTCCATTTTATCCGCATGGTAT 295 259 2126 Antisense
GAAGCATTGGAGACGCCCTAGTTGG 4 343 2156 Antisense
CTGTTAATATTACCCCATCGAAGCC 148 237 2231 Antisense
CCGTCCAACTCCATTAAAGCCAAAG 69 265 2256 Antisense
TAAGGCAGGCGCTTTGGGACCTATT 586 627 2364 Antisense
GGGACCTATTCCTATTAGTTTTGAT 407 493 2379 Antisense
Sequence Source Affymetrix Proprietary Database