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[187139_s_at]

Description F19C6.2A /REP_DB=WormBase Gene ID /WP=CE03231 /TR=SW:Q09307 /GB=CAA88050.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 82      6grp_high1_10_10 > 38      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 81      6grp_total > 09      4grp_total > 60      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 212.5
(-1)
P 		245.6
(3)
P 		212.4
(-1)
P 		195.7
(-3)
P 		50
B 232.8
(2.3)
P 		239.5
(3)
P 		203.2
(-1)
P 		185.2
(-3)
P 		54
C 234.1
(-0.6)
P 		212.1
(-2.7)
P 		271.6
(3)
P 		208.7
(-3)
P 		63
avr 226.5
(2) 		232.4
(3) 		229.1
(2.4) 		196.5
(-3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 263.2
(0.5)
P 		264.9
(0.5)
P 		198.6
(-3)
P 		310.7
(3)
P 		218.6
(-1.9)
P 		252.2
(-0.1)
P 		112
B 249.5
(-0.4)
P 		221
(-3)
P 		287.1
(3)
P 		233.3
(-1.9)
P 		249.3
(-0.4)
P 		246.1
(-0.7)
P 		66
C 329.3
(3)
P 		273.4
(-1)
P 		269.3
(-1.3)
P 		246.4
(-3)
P 		289.3
(0.1)
P 		283.3
(-0.3)
P 		83
avr 280.7
(3) 		253.1
(-2.7) 		251.7
(-3) 		263.5
(-0.6) 		252.4
(-2.9) 		260.5
(-1.2) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 77.4
(3)
P 		53.3
(0)
P 		55.5
(0.3)
P 		28.6
(-3)
P 		49
B 74.2
(3)
P 		59.1
(0.4)
P 		47.1
(-1.7)
P 		39.5
(-3)
P 		35
C 77.5
(1.3)
P 		61
(-0.4)
P 		94.7
(3)
P 		35.2
(-3)
P 		60
avr 76.4
(3) 		57.8
(0.3) 		65.8
(1.5) 		34.4
(-3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 48.5
(-2.4)
P 		94.2
(3)
P 		43.2
(-3)
P 		78.8
(1.2)
P 		66
(-0.3)
P 		61.4
(-0.9)
P 		51
B 86.8
(0.8)
P 		73.6
(-1.2)
P 		69.7
(-1.8)
P 		61.8
(-3)
P 		101.3
(3)
P 		91.8
(1.6)
P 		40
C 122.1
(3)
P 		83.4
(-0.2)
P 		68.5
(-1.4)
P 		49.5
(-3)
P 		93.6
(0.6)
P 		94.8
(0.7)
P 		73
avr 85.8
(2.7) 		83.7
(2.3) 		60.5
(-3) 		63.4
(-2.3) 		87
(3) 		82.7
(2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187139_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16783
Sequence Type Exemplar sequence
Representative Public ID F19C6.2A NCBI
Target Description F19C6.2A /REP_DB=WormBase Gene ID /WP=CE03231 /TR=SW:Q09307 /GB=CAA88050.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077276(11), NM_077277(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077276 NCBI Caenorhabditis elegans F19C6.2a (F19C6.2) mRNA, complete cds. 11/11 None
NM_077277 NCBI Caenorhabditis elegans F19C6.2b (F19C6.2) mRNA, complete cds. 11/11 None
SNAP00000036252 ENSEMBL cdna:SNAP chromosome:CEL140:X:10000869:10004829:1 11/11 None
GENEFINDER00000036258 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10000869:10004829:1 11/11 None
F19C6.2a ENSEMBL cdna:known chromosome:CEL140:X:10000869:10005273:1 gene:F19C6.2 11/11 A 
F19C6.2b ENSEMBL cdna:known chromosome:CEL140:X:10000869:10004829:1 gene:F19C6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10000868-10004829(+) 100.0 100.0
Public Domain and Genome References
Ensembl F19C6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88050 Hypothetical protein F19C6.2a [Caenorhabditis elegans] ref|NP_509677.1| F19C6.2a [Caenorhabditis elegans] sp|Q09307|YQR2_CAEEL Hypothetical protein F19C6.2 in chromosome X 0.0
blast CAE58754 Hypothetical protein CBG01946 [Caenorhabditis briggsae] 0.0
blast CAB62803 Hypothetical protein F19C6.2b [Caenorhabditis elegans] ref|NP_509678.1| F19C6.2b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR010770 EMBL-EBI SGT1 1.0E-126
Pfam IPR010770 EMBL-EBI SGT1 1.3E-61
Pfam IPR010770 EMBL-EBI SGT1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187139_S_AT
acacttggaagctcttcgcgccaagctttttggatctccacagtctgcaactcaccttta
tcagtgtgcaaaatcgttggttactggtaaccatgttcaggaatgtcgcaagatttttgt
tgacgaggggtcaacaagcaaccgagaatcggactgctcaggcaatgaggatgatagcag
caacgcgaaatatgcgaagaaacaggtgttcaagaaaaagaagagaaacgcatttggaaa
aaaacgtgaactcgctgcgattctcgaccacacaaagccatcagaacactcggaaccaga
ttacgtggccccggataactcagcggctctgaagaagttcgaacgagctgtcaatggaga
tgattattacaaggcatcttcggatgaatactctcttggagaagaagaagatttggaact
gttcatggcaaaaccacgcaagaagatccttgaagaaatgaaaaataagaacaaggcgag
attaggaatcaaagtgacggagaggttgccaactgtttcagatgatgaagaaattgacgt
tgcggatatgctccgtgcagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACTTGGAAGCTCTTCGCGCCAAG 294 111 891 Antisense
TCGCGCCAAGCTTTTTGGATCTCCA 78 599 906 Antisense
TTTTGGATCTCCACAGTCTGCAACT 438 677 918 Antisense
GTCTGCAACTCACCTTTATCAGTGT 466 471 933 Antisense
AACCGAGAATCGGACTGCTCAGGCA 398 147 1030 Antisense
ACGTGAACTCGCTGCGATTCTCGAC 606 95 1134 Antisense
AAAGCCATCAGAACACTCGGAACCA 107 125 1164 Antisense
CTCGGAACCAGATTACGTGGCCCCG 705 231 1179 Antisense
CCCGGATAACTCAGCGGCTCTGAAG 414 259 1200 Antisense
GCATCTTCGGATGAATACTCTCTTG 398 309 1264 Antisense
ACGTTGCGGATATGCTCCGTGCAGC 47 93 1427 Antisense
Sequence Source Affymetrix Proprietary Database