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[187136_s_at]

Description F49H12.6A /REP_DB=WormBase Gene ID /WP=CE23754 /TR=Q9N5S8 /GB=AAF39831.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 62      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 53      6grp_total > 62      4grp_total > 47      6grp_highest_sub > 04      6grp_cgc > 74      6grp_high1_sub > 03      6grp_cgc_sub > 02_03_04_05      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 696.5
(3)
P 		487.3
(-0.1)
P 		287
(-3)
P 		327.8
(-2.4)
P 		410
B 602.3
(3)
P 		340.8
(-3)
P 		429
(-1)
P 		438.5
(-0.8)
P 		262
C 681.9
(3)
P 		375.4
(-3)
P 		520.6
(-0.2)
P 		552.9
(0.5)
P 		307
avr 660.2
(3) 		401.2
(-3) 		412.2
(-2.7) 		439.7
(-2.1) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 856
1 2 3 4 5 6 range
A 599.4
(-2.8)
P 		1080.4
(2.2)
P 		1026.5
(1.6)
P 		1157.7
(3)
P 		907.8
(0.4)
P 		577.8
(-3)
P 		580
B 537.6
(-3)
P 		944.4
(-0.1)
P 		1393.3
(3)
P 		1301.6
(2.4)
P 		936.5
(-0.2)
P 		605.3
(-2.5)
P 		856
C 655.7
(-2.6)
P 		931.6
(-0.2)
P 		1304.1
(3)
P 		1079.4
(1.1)
P 		944.5
(-0.1)
P 		611
(-3)
P 		693
avr 597.6
(-3) 		985.5
(0.6) 		1241.3
(3) 		1179.6
(2.4) 		929.6
(0.1) 		598
(-3) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 206
1 2 3 4 range
A 253.6
(3)
P 		105.8
(-1.3)
P 		75
(-2.2)
P 		48
(-3)
P 		206
B 192.1
(3)
P 		84.2
(-3)
P 		99.4
(-2.2)
P 		93.4
(-2.5)
P 		108
C 225.7
(3)
P 		107.9
(-2.3)
P 		181.5
(1)
P 		93.2
(-3)
P 		133
avr 223.8
(3) 		99.3
(-2.1) 		118.6
(-1.3) 		78.2
(-3) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 274
1 2 3 4 5 6 range
A 110.5
(-3)
P 		384.2
(3)
P 		223.5
(-0.5)
P 		293.6
(1)
P 		273.9
(0.6)
P 		140.7
(-2.3)
P 		274
B 187.1
(-3)
P 		314.4
(0.9)
P 		338.3
(1.7)
P 		344.8
(1.9)
P 		380.5
(3)
P 		225.7
(-1.8)
P 		193
C 243
(-1.2)
P 		284.3
(0.8)
P 		331.9
(3)
P 		217.1
(-2.4)
P 		305.6
(1.8)
P 		204.5
(-3)
P 		127
avr 180.2
(-3) 		327.6
(3) 		297.9
(1.8) 		285.2
(1.3) 		320
(2.7) 		190.3
(-2.6) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187136_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18491
Sequence Type Exemplar sequence
Representative Public ID F49H12.6A NCBI
Target Description F49H12.6A /REP_DB=WormBase Gene ID /WP=CE23754 /TR=Q9N5S8 /GB=AAF39831.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075979(11), NM_075978(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075979 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-4) (acl-4) mRNA, complete cds. 11/11 None
NM_075978 NCBI Caenorhabditis elegans ACyLtransferase-like family member (acl-4) (acl-4) mRNA, complete cds. 11/11 None
SNAP00000015648 ENSEMBL cdna:SNAP chromosome:CEL140:X:2066962:2070390:-1 11/11 None
GENEFINDER00000015664 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2066962:2070390:-1 11/11 None
F49H12.6b ENSEMBL cdna:known chromosome:CEL140:X:2066548:2070435:-1 gene:F49H12.6 11/11 A 
F49H12.6a ENSEMBL cdna:known chromosome:CEL140:X:2066550:2070437:-1 gene:F49H12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2066961-2070390(-) 100.0 100.0
Public Domain and Genome References
Ensembl F49H12.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39832 Acyltransferase-like protein 4, isoform b [Caenorhabditis elegans] ref|NP_508380.2| ACyLtransferase-like family member (acl-4) [Caenorhabditis elegans] 0.0
blast AAF39831 Acyltransferase-like protein 4, isoform a [Caenorhabditis elegans] ref|NP_508379.1| ACyLtransferase-like family member (acl-4) [Caenorhabditis elegans] 0.0
blast CAE68361 Hypothetical protein CBG14100 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.4E-33
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.4E-33
Pfam IPR002123 EMBL-EBI Phospholipid/glycerol acyltransferase 1.4E-33
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508380.2 2 31-53,60-82
NP_508379.1 2 10-32,269-291
F49H12.6b 2 31-53,60-82
F49H12.6a 2 10-32,269-291
SNAP00000015648 2 10-32,269-291
GENEFINDER00000015664 2 10-32,248-270
Sequence
Target Sequence 
>C. ELEGANS:187136_S_AT
aggcacctgcatcaataacacgtctgttatgatgtttaagaaaggatcttttgagattgg
cacaaccatctacccaattgcaatgaaatacgattcacgtttcggagacgcgttctggaa
cagctcagagcaatcgtggtgcggatatatcatgagaatgatgacttcgtgggccattat
ttgcaatgtctggtacctgccgccaatgacaagacgagatggagaggatgccgtcgactt
tgcgaaccgcgtgaaaaaagaaattgccaacaaaggtggcctggtcgatttggaatggga
tggaggactgaagagagcaaaagttccgccaaaaatggtggccaagcagcaagaacgata
tgccaatcgactttctcgctatacgtctgtatcggaagttgtcaaggatgaagatgtaga
tgttacttctgattatttggtagacaagccggtatctggatacaattctcttgaggattt
gccagaagacgtttttatcgacgaggaggaagacgaaacaatagatgcacacgatgaaaa
tgaaaatgacgatcctgccggcgaatcaaatattcttcctaacaaacctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGCACCTGCATCAATAACACGTCT 191 55 1245 Antisense
CACAACCATCTACCCAATTGCAATG 241 195 1305 Antisense
GTTTCGGAGACGCGTTCTGGAACAG 268 449 1343 Antisense
GATGACTTCGTGGGCCATTATTTGC 656 409 1404 Antisense
TACCTGCCGCCAATGACAAGACGAG 639 649 1438 Antisense
ATGGAGAGGATGCCGTCGACTTTGC 331 51 1463 Antisense
AAAGGTGGCCTGGTCGATTTGGAAT 578 119 1516 Antisense
ATATGCCAATCGACTTTCTCGCTAT 363 21 1602 Antisense
GACTTTCTCGCTATACGTCTGTATC 141 373 1613 Antisense
ATGAAAATGACGATCCTGCCGGCGA 507 41 1784 Antisense
CAAATATTCTTCCTAACAAACCTCT 58 191 1811 Antisense
Sequence Source Affymetrix Proprietary Database