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[187135_at]

Description Y47G6A.17 /REP_DB=WormBase Gene ID /WP=CE24361 /TR=Q9N3T0 /GB=AAF60664.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 54      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 25.5
(3)
A 		3.8
(-2.4)
A 		1.2
(-3)
A 		1.8
(-2.9)
A 		24
B 10.9
(-0.9)
A 		27.9
(3)
A 		23.6
(2)
A 		1.5
(-3)
A 		26
C 19.6
(3)
A 		3.9
(-2.6)
A 		2.7
(-3)
A 		7.4
(-1.3)
A 		17
avr 18.7
(3) 		11.9
(0.3) 		9.2
(-0.8) 		3.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 2.3
(-2.7)
A 		1.5
(-3)
A 		1.5
(-3)
A 		10.5
(0.9)
A 		15.3
(3)
A 		4.8
(-1.6)
A 		14
B 2.9
(-2.9)
A 		3.7
(-2.7)
A 		43.3
(3)
A 		2.2
(-3)
A 		1.9
(-3)
A 		7.8
(-2.1)
A 		41
C 8.1
(-1.9)
A 		9.8
(-1.6)
A 		4.9
(-2.5)
A 		35.1
(3)
A 		1.9
(-3)
A 		4.9
(-2.5)
A 		33
avr 4.4
(-3) 		5
(-2.7) 		16.6
(3) 		15.9
(2.7) 		6.4
(-2) 		5.8
(-2.3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.3
(3)
A 		0.8
(-2.7)
A 		0.3
(-3)
A 		0.3
(-3)
A 		9
B 3.5
(-0.1)
A 		6.9
(3)
A 		5.5
(1.7)
A 		0.3
(-3)
A 		7
C 6.5
(3)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		1.2
(-2.7)
A 		6
avr 6.4
(3) 		2.9
(-0.6) 		2.2
(-1.3) 		0.6
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.4
(-2.9)
A 		0.5
(-2.7)
A 		0.3
(-3)
A 		2.7
(0.3)
A 		4.6
(3)
A 		1.2
(-1.7)
A 		4
B 1
(-2.8)
A 		1.2
(-2.6)
A 		10.5
(3)
A 		0.6
(-3)
A 		0.8
(-2.9)
A 		2.9
(-1.6)
A 		10
C 3
(-0.8)
A 		3
(-0.8)
A 		1.3
(-2.4)
A 		7.1
(3)
A 		0.6
(-3)
A 		1.6
(-2.1)
A 		7
avr 1.5
(-3) 		1.6
(-2.8) 		4
(3) 		3.5
(1.8) 		2
(-1.8) 		1.9
(-2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.309
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.17 NCBI
Target Description Y47G6A.17 /REP_DB=WormBase Gene ID /WP=CE24361 /TR=Q9N3T0 /GB=AAF60664.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058769(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058769 NCBI Caenorhabditis elegans Y47G6A.17 (Y47G6A.17) mRNA, complete cds. 11/11 None
SNAP00000033978 ENSEMBL cdna:SNAP chromosome:CEL140:I:3492714:3499708:-1 11/11 None
GENEFINDER00000034071 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3492714:3499165:-1 11/11 None
Y47G6A.17 ENSEMBL cdna:known chromosome:CEL140:I:3492714:3499708:-1 gene:Y47G6A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3492630-3499708(-) 97.75 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.17
Entrez Gene 3565260 Entrez gene
SwissProt Q9N3T0 EMBL-EBI
WormBase CE36745 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491170 Y47G6A.17 [Caenorhabditis elegans] gb|AAF60664.2| Hypothetical protein Y47G6A.17 [Caenorhabditis elegans] 0.0
blast CAE68962 Hypothetical protein CBG14942 [Caenorhabditis briggsae] 0.0
blast XP_653447 Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] gb|EAL48061.1| Viral A-type inclusion protein repeat, putative [Entamoeba histolytica HM-1:IMSS] 8.0E-21
Sequence
Target Sequence 
>C. ELEGANS:187135_AT
ggaactgtcagcttacaacaacttgagctacttcgctcgaatatattccaggcgagacag
aaagaggccgaaattgcagcgaaaatggaaaatatagacaagttgaaggaagaatctgaa
actgaaatgctcagaattcgggctctccgaactgccaacgaggtgttgtccaactttgac
gggcacgaaatgcagccgcagggcaataatgaagtggctgaaagacaactgcaattggca
tattttacatcttctcaacagagtgctaaagcaaagcaattcgagagaatggtgcatttg
aaggagcaaagagtggctgagttgaacgatgaaatgagagagttgaagcaatggaatctg
gaattgataacgacattggagaatattaagactttcaaaggggaacgacgagaatcccaa
cacatcaaaccagaaatatccctgaaacctcgagaatctatagcggtcgaccaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGTCAGCTTACAACAACTTG 653 529 2818 Antisense
CAACAACTTGAGCTACTTCGCTCGA 241 189 2833 Antisense
ACTTCGCTCGAATATATTCCAGGCG 626 101 2847 Antisense
GAAATGCTCAGAATTCGGGCTCTCC 13 363 2941 Antisense
CTCTCCGAACTGCCAACGAGGTGTT 236 231 2960 Antisense
GGTGTTGTCCAACTTTGACGGGCAC 319 499 2979 Antisense
TGACGGGCACGAAATGCAGCCGCAG 678 565 2994 Antisense
GGCATATTTTACATCTTCTCAACAG 492 537 3054 Antisense
GAACGACGAGAATCCCAACACATCA 108 347 3220 Antisense
AATATCCCTGAAACCTCGAGAATCT 490 173 3252 Antisense
GAGAATCTATAGCGGTCGACCAACT 199 391 3269 Antisense
Sequence Source Affymetrix Proprietary Database