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[187134_s_at]

Description Y75D11A.3 /REP_DB=WormBase Gene ID /WP=CE23050 /TR=Q9N4D0 /GB=AAF36056.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 45      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 57.6
(2.6)
A 		60.3
(3)
A 		19.2
(-3)
A 		36.8
(-0.4)
A 		41
B 7
(-3)
A 		9.8
(-2.4)
A 		35.9
(3)
A 		9.6
(-2.5)
A 		29
C 85.6
(3)
A 		58.4
(0.8)
A 		18.2
(-2.4)
A 		11
(-3)
A 		75
avr 50.1
(3) 		42.8
(1.6) 		24.4
(-2) 		19.1
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 34.8
(-1.5)
A 		3.7
(-3)
A 		7
(-2.8)
A 		5.4
(-2.9)
A 		43.3
(-1.1)
A 		132
(3)
P 		128
B 5
(-3)
A 		11.1
(-2.3)
A 		22.8
(-1)
A 		9.7
(-2.5)
A 		43.9
(1.4)
A 		58.2
(3)
A 		53
C 5
(-3)
A 		7.2
(-2.8)
A 		6.1
(-2.9)
A 		68.1
(1.7)
A 		51.3
(0.4)
A 		86.2
(3)
A 		81
avr 14.9
(-2.5) 		7.3
(-3) 		12
(-2.7) 		27.7
(-1.6) 		46.2
(-0.2) 		92.1
(3) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 21
(3)
A 		13.1
(0)
A 		5
(-3)
A 		5.4
(-2.9)
A 		16
B 2.2
(-2.8)
A 		2.4
(-2.6)
A 		8.3
(3)
A 		2
(-3)
A 		6
C 28.3
(3)
A 		16.8
(0.4)
A 		6.4
(-2)
A 		1.9
(-3)
A 		26
avr 17.2
(3) 		10.8
(0.3) 		6.6
(-1.5) 		3.1
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 6.4
(-2)
A 		1.3
(-3)
A 		1.5
(-3)
A 		1.4
(-3)
A 		13.1
(-0.7)
A 		32.1
(3)
P 		31
B 1.7
(-3)
A 		3.7
(-2.4)
A 		5.5
(-1.9)
A 		2.6
(-2.7)
A 		17.8
(1.8)
A 		21.7
(3)
A 		20
C 1.8
(-2.9)
A 		2.2
(-2.8)
A 		1.5
(-3)
A 		13.7
(-0.3)
A 		16.6
(0.3)
A 		28.8
(3)
A 		27
avr 3.3
(-2.8) 		2.4
(-3) 		2.8
(-2.9) 		5.9
(-2.2) 		15.8
(0.2) 		27.5
(3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187134_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18486
Sequence Type Exemplar sequence
Representative Public ID Y75D11A.3 NCBI
Target Description Y75D11A.3 /REP_DB=WormBase Gene ID /WP=CE23050 /TR=Q9N4D0 /GB=AAF36056.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075919(11), NM_075920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075919 NCBI Caenorhabditis elegans Y75D11A.2 (Y75D11A.2) mRNA, complete cds. 11/11 None
NM_075920 NCBI Caenorhabditis elegans Y75D11A.3 (Y75D11A.3) mRNA, complete cds. 11/11 None
SNAP00000021926 ENSEMBL cdna:SNAP chromosome:CEL140:X:1742843:1743518:1 11/11 None
GENEFINDER00000021979 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1742843:1743667:1 11/11 None
GENEFINDER00000021983 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1745372:1746196:-1 11/11 None
SNAP00000021927 ENSEMBL cdna:SNAP chromosome:CEL140:X:1745521:1746196:-1 11/11 None
Y75D11A.2 ENSEMBL cdna:known chromosome:CEL140:X:1742843:1743518:1 gene:Y75D11A.2 11/11 None
Y75D11A.3 ENSEMBL cdna:known chromosome:CEL140:X:1745263:1746212:-1 gene:Y75D11A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1742842-1743512(+) 97.79 97.79
chrX:1745520-1746196(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y75D11A.2
Y75D11A.3
Entrez Gene 180499 Entrez gene
190722 Entrez gene
SwissProt Q9N4D1 EMBL-EBI
Q9N4D0 EMBL-EBI
WormBase CE23051 Wormbase
CE23050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36058 Hypothetical protein Y75D11A.2 [Caenorhabditis elegans] ref|NP_508320.1| Y75D11A.2 [Caenorhabditis elegans] 1.0E-96
blast AAF36056 Hypothetical protein Y75D11A.3 [Caenorhabditis elegans] ref|NP_508321.1| Y75D11A.3 [Caenorhabditis elegans] 4.0E-96
blast AAF36056 Hypothetical protein Y75D11A.3 [Caenorhabditis elegans] ref|NP_508321.1| Y75D11A.3 [Caenorhabditis elegans] 5.0E-93
blast AAF36058 Hypothetical protein Y75D11A.2 [Caenorhabditis elegans] ref|NP_508320.1| Y75D11A.2 [Caenorhabditis elegans] 5.0E-93
Sequence
Target Sequence 
>C. ELEGANS:187134_S_AT
agaagagttcttcgtccaattcagcatcagctgctggatgccttccttcaacctgatggt
ggctgctgagaagggacgagtgttgcagcgggatccgatgttcaagaccgtcccaagatt
gctcttcaaggagctccgccagcttccggctaatgacgacatttccgatggtgaattgaa
gaagaaaatcgcggatgccatcgacctctacctgccagagaccgtcgagcttttgcgaat
cacattccacgaggacgtgacgagaatcatccagaaccaagcggcaatggcaagaaggga
gaaggagctcaatactcccaagctcgtcaagcctcaggacatgctcaaacgtgtcaagcc
tgccgagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGAGTTCTTCGTCCAATTCAGC 275 75 27 Antisense
TGCCTTCCTTCAACCTGATGGTGGC 498 583 65 Antisense
AGGGACGAGTGTTGCAGCGGGATCC 126 59 98 Antisense
CGGGATCCGATGTTCAAGACCGTCC 267 245 115 Antisense
TCAAGACCGTCCCAAGATTGCTCTT 611 629 128 Antisense
CCAGCTTCCGGCTAATGACGACATT 604 271 165 Antisense
GACCGTCGAGCTTTTGCGAATCACA 325 383 246 Antisense
GCGAATCACATTCCACGAGGACGTG 194 289 261 Antisense
AGGAGCTCAATACTCCCAAGCTCGT 320 55 329 Antisense
CTCGTCAAGCCTCAGGACATGCTCA 690 231 349 Antisense
TCAAACGTGTCAAGCCTGCCGAGAA 549 629 371 Antisense
Sequence Source Affymetrix Proprietary Database