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[187133_at]

Description Y113G7B.18 /REP_DB=WormBase Gene ID /WP=CE23298 /TR=Q9NAL4 /GB=CAB76740.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 13      6grp_cgc > 29      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 51.4
(2.5)
A 		54.7
(3)
A 		17.1
(-3)
A 		48.9
(2.1)
A 		38
B 56.4
(0.4)
A 		20.7
(-3)
A 		21.5
(-2.9)
A 		84.2
(3)
A 		64
C 45.1
(-1.7)
A 		26.9
(-3)
A 		43
(-1.9)
A 		112.1
(3)
A 		85
avr 51
(-0.4) 		34.1
(-2.2) 		27.2
(-3) 		81.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 29.9
(-0.8)
A 		55.5
(1.5)
A 		40.8
(0.2)
A 		5.6
(-3)
A 		71.6
(3)
A 		66.3
(2.5)
A 		66
B 41.3
(2.9)
A 		14.5
(-3)
A 		26.1
(-0.5)
A 		36.5
(1.8)
A 		21.2
(-1.5)
A 		41.9
(3)
A 		27
C 18.4
(-2.6)
A 		59.9
(1.2)
A 		22.1
(-2.2)
A 		13.5
(-3)
A 		29.3
(-1.6)
A 		80.5
(3)
A 		67
avr 29.9
(-1.5) 		43.3
(0.4) 		29.7
(-1.5) 		18.5
(-3) 		40.7
(0) 		62.9
(3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 18.7
(3)
A 		11.9
(0.1)
A 		4.5
(-3)
A 		7.2
(-1.9)
A 		14
B 18
(3)
A 		5.1
(-3)
A 		5
(-3)
A 		18
(3)
A 		13
C 14.9
(0.9)
A 		7.7
(-3)
A 		15
(0.9)
A 		18.9
(3)
A 		11
avr 17.2
(3) 		8.2
(-3) 		8.2
(-3) 		14.7
(1.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 5.5
(-1.8)
A 		19.8
(2.5)
A 		8.9
(-0.8)
A 		1.4
(-3)
A 		21.6
(3)
A 		16.2
(1.4)
A 		20
B 14.4
(2.3)
A 		4.8
(-3)
A 		6.3
(-2.2)
A 		9.7
(-0.3)
A 		8.6
(-0.9)
A 		15.6
(3)
A 		11
C 6.8
(-2)
A 		18.3
(0.9)
A 		5.6
(-2.3)
A 		2.7
(-3)
A 		9.5
(-1.3)
A 		27
(3)
A 		24
avr 8.9
(-1.3) 		14.3
(0.9) 		6.9
(-2.1) 		4.6
(-3) 		13.2
(0.4) 		19.6
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14115
Sequence Type Exemplar sequence
Representative Public ID Y113G7B.18 NCBI
Target Description Y113G7B.18 /REP_DB=WormBase Gene ID /WP=CE23298 /TR=Q9NAL4 /GB=CAB76740.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075507(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075507 NCBI Caenorhabditis elegans MeDiaTor family member (mdt-17) (mdt-17) mRNA, complete cds. 11/11 None
SNAP00000024717 ENSEMBL cdna:SNAP chromosome:CEL140:V:20257380:20265280:-1 11/11 None
GENEFINDER00000024722 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20237856:20265280:-1 11/11 None
Y113G7B.18 ENSEMBL cdna:known chromosome:CEL140:V:20260286:20265280:-1 gene:Y113G7B.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075506 5/11 Cross Hyb Matching Probes None
Y113G7B.21 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20260285-20265280(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mdt-17
Ensembl Y113G7B.18
Entrez Gene 180325 Entrez gene
SwissProt Q9NAL4 EMBL-EBI
WormBase CE23298 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB76740 Hypothetical protein Y113G7B.18 [Caenorhabditis elegans] ref|NP_507908.1| MeDiaTor family member (mdt-17) [Caenorhabditis elegans] 0.0
blast CAB54337 Hypothetical protein Y113G7B.23 [Caenorhabditis elegans] ref|NP_507906.1| Phasmid Socket Absent family member (psa-1) [Caenorhabditis elegans] gb|AAG16654.1| SWI3-like protein; PSA-1 [Caenorhabditis elegans] 1.0E-138
blast CAB76740 Hypothetical protein Y113G7B.18 [Caenorhabditis elegans] ref|NP_507908.1| MeDiaTor family member (mdt-17) [Caenorhabditis elegans] 1.0E-130
blast CAE67424 Hypothetical protein CBG12912 [Caenorhabditis briggsae] 1.0E-117
blast CAB76740 Hypothetical protein Y113G7B.18 [Caenorhabditis elegans] ref|NP_507908.1| MeDiaTor family member (mdt-17) [Caenorhabditis elegans] 1.0E-69
blast CAG32512 hypothetical protein [Gallus gallus] ref|NP_001006280.1| cofactor required for Sp1 transcriptional activation, subunit 6, 77kDa [Gallus gallus] 5.0E-26
blast NP_001016974 cofactor required for Sp1 transcriptional activation, subunit 6, 77kDa [Xenopus tropicalis] 3.0E-25
Protein Domains
Database ID Description E-Value
Pfam IPR001888 EMBL-EBI Transposase, type 1 3.8E-8
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 1.6E-4
Pfam IPR001005 EMBL-EBI Myb DNA-binding domain 0.33
Pfam IPR007526 EMBL-EBI SWIRM 2.9E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507908.1 1 529-550
Y113G7B.18 1 529-550
Sequence
Target Sequence 
>C. ELEGANS:187133_AT
gaaatgcgtgaaatctggcgagtacgaaaagtcggcgactacatttgcggagacctatcc
tatcacattttcggctggaaatacgatactccggcgattttcgacatttcccgacgatct
ctaagcaataatatggaaaatttgtcgattatcgaagtttcggtgcccaaagatttggct
cgacggtcgatgctcgccgtcagtattgtacaggacgatattcaaagcggaaatggtctc
tttcgggatcctaaagacaagaaatatacatattcctatagagaatcggattcggagaaa
gttaaactattgcactggaaggattcgttgaaatgggcacagaatacacttttactcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAATGCGTGAAATCTGGCGAGTAC 530 361 1168 Antisense
GCGACTACATTTGCGGAGACCTATC 690 287 1202 Antisense
GACCTATCCTATCACATTTTCGGCT 226 383 1219 Antisense
ATACGATACTCCGGCGATTTTCGAC 447 23 1248 Antisense
GATTTTCGACATTTCCCGACGATCT 606 429 1263 Antisense
TTTCCCGACGATCTCTAAGCAATAA 377 669 1274 Antisense
GAAGTTTCGGTGCCCAAAGATTTGG 186 323 1321 Antisense
ATTTGGCTCGACGGTCGATGCTCGC 490 17 1340 Antisense
ATGCTCGCCGTCAGTATTGTACAGG 648 39 1357 Antisense
GCGGAAATGGTCTCTTTCGGGATCC 590 293 1394 Antisense
GGGCACAGAATACACTTTTACTCAG 127 491 1502 Antisense
Sequence Source Affymetrix Proprietary Database