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[187132_at]

Description Y75D11A.5 /REP_DB=WormBase Gene ID /WP=CE24671 /TR=Q9N4C8 /GB=AAF36060.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 136
1 2 3 4 range
A 41.3
(-2)
A 		28.3
(-3)
A 		49.6
(-1.4)
A 		106.4
(3)
A 		78
B 36.3
(-2.2)
A 		55
(3)
A 		50.6
(1.8)
A 		33.6
(-3)
A 		21
C 18.8
(-2.5)
A 		6.8
(-3)
A 		10.2
(-2.9)
A 		142.8
(3)
M 		136
avr 32.1
(-2.8) 		30
(-3) 		36.8
(-2.4) 		94.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 75.8
(3)
A 		9.4
(-3)
A 		54.6
(1.1)
A 		42.9
(0)
A 		58
(1.4)
A 		27.6
(-1.4)
A 		66
B 37.8
(3)
A 		33.8
(2.3)
A 		3.3
(-3)
A 		17.5
(-0.5)
A 		19.3
(-0.2)
A 		15.7
(-0.8)
A 		35
C 3.8
(-2.9)
A 		33
(0.6)
A 		13.8
(-1.7)
A 		21.1
(-0.8)
A 		52.7
(3)
A 		2.7
(-3)
A 		50
avr 39.1
(2.1) 		25.4
(-0.8) 		23.9
(-1.2) 		27.2
(-0.5) 		43.3
(3) 		15.3
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 15
(2.6)
A 		6.2
(-3)
A 		13
(1.3)
A 		15.6
(3)
A 		9
B 11.6
(1.1)
A 		13.6
(3)
A 		11.7
(1.2)
A 		7.2
(-3)
A 		6
C 6.2
(-1.9)
A 		2
(-3)
A 		3.6
(-2.6)
A 		24.1
(3)
M 		22
avr 10.9
(-0.4) 		7.3
(-3) 		9.4
(-1.5) 		15.6
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 14
(1.5)
A 		3.3
(-3)
A 		11.9
(0.6)
A 		10.9
(0.2)
A 		17.5
(3)
A 		6.7
(-1.6)
A 		14
B 13.2
(3)
A 		11.3
(2.1)
A 		0.8
(-3)
A 		4.6
(-1.2)
A 		7.8
(0.4)
A 		5.8
(-0.6)
A 		12
C 1.4
(-2.8)
A 		10.1
(0.4)
A 		3.5
(-2)
A 		4.3
(-1.7)
A 		17.1
(3)
A 		0.9
(-3)
A 		16
avr 9.5
(0.1) 		8.2
(-0.7) 		5.4
(-2.4) 		6.6
(-1.7) 		14.1
(3) 		4.5
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187132_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18472
Sequence Type Exemplar sequence
Representative Public ID Y75D11A.5 NCBI
Target Description Y75D11A.5 /REP_DB=WormBase Gene ID /WP=CE24671 /TR=Q9N4C8 /GB=AAF36060.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075923(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075923 NCBI Caenorhabditis elegans Y75D11A.5 (Y75D11A.5) mRNA, complete cds. 11/11 None
Y75D11A.5 ENSEMBL cdna:known chromosome:CEL140:X:1766399:1774144:-1 gene:Y75D11A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl Y75D11A.5
Entrez Gene 190724 Entrez gene
SwissProt Q9N4C8 EMBL-EBI
WormBase CE24671 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6310 DNA recombination inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF36060 Hypothetical protein Y75D11A.5 [Caenorhabditis elegans] ref|NP_508324.1| Y75D11A.5 [Caenorhabditis elegans] 0.0
blast CAB54374 Hypothetical protein Y105C5B.26 [Caenorhabditis elegans] ref|NP_502915.1| Y105C5B.26 [Caenorhabditis elegans] 0.0
blast AAB71060 Hypothetical protein R52.2 [Caenorhabditis elegans] ref|NP_494191.1| R52.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 4.9E-8
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 0.0020
Pfam IPR008737 EMBL-EBI Eukaryotic proteins of unknown function 5585 1.0E-126
Pfam IPR008042 EMBL-EBI Retrotransposon, Pao 1.8E-93
Pfam IPR000477 EMBL-EBI RNA-directed DNA polymerase (Reverse transcriptase) 0.0072
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508324.1 5 1942-1964,1985-2007,2012-2034,2055-2077,2540-2562
Y75D11A.5 5 1942-1964,1985-2007,2012-2034,2055-2077,2540-2562
Sequence
Target Sequence 
>C. ELEGANS:187132_AT
ggatactgttgtcacgtcagctattttagaagcagtggtatcgttcaatgtagagtttcg
gaatgcttctgtgtcaagactaactcaagtacaatcgtgtcaagtgaaacagatcggaca
gctgagcgggtgctactcttgtgccactggaggacaggctcaactgtcatgtaaatcaaa
gcggaaaatgatggcaagagttctgtgtaatgcaatggatggctcggttcaatgcggtcc
tgaaggaacagcaatgatttggacattctcaaccccggatcaaggtgttttggtcaattg
cactgcggattgtggcttacggactaactggatgcttagcggacgactaaaggatccacc
caccttctccatgaataagtcatattttgcgaacccttttgaaactgttaagtcttcctc
cttctctttcggtcaagttctcttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATACTGTTGTCACGTCAGCTATT 79 511 7149 Antisense
GAGTTTCGGAATGCTTCTGTGTCAA 400 399 7201 Antisense
GATCGGACAGCTGAGCGGGTGCTAC 282 419 7260 Antisense
TGCTACTCTTGTGCCACTGGAGGAC 49 581 7279 Antisense
TGGATGGCTCGGTTCAATGCGGTCC 655 549 7364 Antisense
CATTCTCAACCCCGGATCAAGGTGT 237 217 7412 Antisense
TGCGGATTGTGGCTTACGGACTAAC 374 579 7452 Antisense
GCGGACGACTAAAGGATCCACCCAC 306 269 7487 Antisense
CACCCACCTTCTCCATGAATAAGTC 329 201 7505 Antisense
TGAAACTGTTAAGTCTTCCTCCTTC 517 571 7548 Antisense
TTCTCTTTCGGTCAAGTTCTCTTTA 317 673 7570 Antisense
Sequence Source Affymetrix Proprietary Database