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[187131_at]

Description Y106G6H.16 /REP_DB=WormBase Gene ID /WP=CE23216 /TR=Q9XWR9 /GB=CAA21579.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_high_8_8 > 12      6grp_total > 77      4grp_total > 11      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 194
1 2 3 4 range
A 198.4
(-2.5)
P 		192.9
(-2.7)
P 		185.6
(-3)
A 		329.2
(3)
P 		144
B 155.2
(-2.9)
P 		186
(-1.6)
P 		152.9
(-3)
P 		296.4
(3)
P 		144
C 231.1
(0)
P 		176
(-1.7)
P 		135.3
(-3)
P 		324.5
(3)
P 		189
avr 194.9
(-1.6) 		185
(-2) 		157.9
(-3) 		316.7
(3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 254.4
(-1.8)
P 		167.1
(-3)
P 		235.1
(-2.1)
P 		283.7
(-1.5)
P 		321.7
(-1)
P 		622
(3)
P 		455
B 122.4
(-3)
P 		261.1
(-1.2)
P 		310.7
(-0.6)
P 		191.4
(-2.1)
P 		328
(-0.4)
P 		593.4
(3)
P 		471
C 139.1
(-3)
A 		276.6
(-1.7)
P 		202
(-2.4)
P 		273.5
(-1.8)
P 		294.7
(-1.6)
P 		787.2
(3)
P 		648
avr 172
(-3) 		234.9
(-2.2) 		249.3
(-2.1) 		249.5
(-2.1) 		314.8
(-1.3) 		667.5
(3) 		496
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 72.2
(3)
P 		41.9
(-3)
P 		48.5
(-1.7)
A 		48.2
(-1.8)
P 		30
B 49.5
(0)
P 		45.9
(-0.7)
P 		35.4
(-3)
P 		63.2
(3)
P 		28
C 76.5
(3)
P 		50.6
(-2.3)
P 		47.1
(-3)
P 		54.7
(-1.4)
P 		29
avr 66.1
(3) 		46.1
(-2.4) 		43.7
(-3) 		55.4
(0.1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 221
1 2 3 4 5 6 range
A 46.9
(-3)
P 		59.4
(-2.3)
P 		51.2
(-2.8)
P 		71.9
(-1.6)
P 		97.1
(-0.1)
P 		151.4
(3)
P 		105
B 42.6
(-3)
P 		86.9
(-1.5)
P 		75.5
(-1.9)
P 		50.7
(-2.7)
P 		133.2
(0)
P 		221.3
(3)
P 		179
C 51.5
(-3)
A 		84.4
(-2.1)
P 		51.4
(-3)
P 		55
(-2.9)
P 		95.4
(-1.8)
P 		263.5
(3)
P 		212
avr 47
(-3) 		76.9
(-1.9) 		59.4
(-2.5) 		59.2
(-2.6) 		108.6
(-0.8) 		212.1
(3) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187131_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2471
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.16 NCBI
Target Description Y106G6H.16 /REP_DB=WormBase Gene ID /WP=CE23216 /TR=Q9XWR9 /GB=CAA21579.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060339(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060339 NCBI Caenorhabditis elegans Y106G6H.16 (Y106G6H.16) mRNA, complete cds. 11/11 None
GENEFINDER00000001724 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10483036:10483616:1 11/11 None
Y106G6H.16 ENSEMBL cdna:known chromosome:CEL140:I:10482987:10483620:1 gene:Y106G6H.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10482966-10483551(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.16
Entrez Gene 172927 Entrez gene
SwissProt Q9XWR9 EMBL-EBI
WormBase CE23216 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21579 Hypothetical protein Y106G6H.16 [Caenorhabditis elegans] ref|NP_492740.1| Y106G6H.16 [Caenorhabditis elegans] 6.0E-76
blast CAA21579 Hypothetical protein Y106G6H.16 [Caenorhabditis elegans] ref|NP_492740.1| Y106G6H.16 [Caenorhabditis elegans] 1.0E-74
blast CAE58951 Hypothetical protein CBG02219 [Caenorhabditis briggsae] 1.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_492740.1 1 107-126
Y106G6H.16 1 107-126
GENEFINDER00000001724 1 107-126
Sequence
Target Sequence 
>C. ELEGANS:187131_AT
aaaatgggcaggacgttcgcaacgaagcagaaaaattgctcaaagatgctctttctgttg
acgcagaatgtgttccgtccacatgtgtaaagccagataaaatctgcaaaatcttaaatt
atcatataaataaaacaagctccccaccagttcaaagtattcgaatgcgccattttactc
gatctccaacagaaaataaaaaaataataaacacaataaaagtacaacctaactcgtctt
catgtctacgatgcacagttttaataataatttttacccttctttgtctcatagcttatc
atttctactttttgcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATGGGCAGGACGTTCGCAACGA 359 133 77 Antisense
GATGCTCTTTCTGTTGACGCAGAAT 633 413 121 Antisense
GACGCAGAATGTGTTCCGTCCACAT 270 381 136 Antisense
GTTCCGTCCACATGTGTAAAGCCAG 596 437 148 Antisense
ATAAATAAAACAAGCTCCCCACCAG 239 25 202 Antisense
CTCCCCACCAGTTCAAAGTATTCGA 4 235 216 Antisense
CGAATGCGCCATTTTACTCGATCTC 5 255 238 Antisense
GTACAACCTAACTCGTCTTCATGTC 490 461 298 Antisense
GTCTTCATGTCTACGATGCACAGTT 39 469 312 Antisense
CCCTTCTTTGTCTCATAGCTTATCA 388 259 353 Antisense
AGCTTATCATTTCTACTTTTTGCGA 414 77 369 Antisense
Sequence Source Affymetrix Proprietary Database