[Home] | [Total List]

[187130_at]

Description Y57A10A.20 /REP_DB=WormBase Gene ID /WP=CE22623 /TR=Q9NA80 /GB=CAB55023.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 12      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 58.7
(-0.9)
A 		11
(-3)
A 		24.1
(-2.4)
A 		150.2
(3)
P 		139
B 56.2
(3)
A 		48.1
(1.9)
A 		11.4
(-3)
A 		52.9
(2.6)
A 		45
C 11.7
(-2.8)
A 		40.6
(-1.4)
A 		7.4
(-3)
A 		134.4
(3)
P 		127
avr 42.2
(-1.3) 		33.2
(-1.8) 		14.3
(-3) 		112.5
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 11.8
(-2.5)
A 		8.8
(-3)
A 		41.6
(3)
A 		31.7
(1.2)
A 		37.7
(2.3)
A 		27.7
(0.5)
A 		33
B 13
(-2)
A 		17.5
(-1.4)
A 		32.2
(0.4)
A 		53
(3)
A 		5.1
(-3)
A 		34.7
(0.7)
A 		48
C 55.5
(1.1)
A 		78.5
(3)
A 		8.1
(-2.8)
A 		9.8
(-2.7)
A 		35.1
(-0.6)
A 		6.1
(-3)
A 		72
avr 26.8
(-1) 		34.9
(3) 		27.3
(-0.8) 		31.5
(1.3) 		26
(-1.4) 		22.8
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 21.4
(2.8)
A 		2.4
(-3)
A 		6.3
(-1.8)
A 		22
(3)
P 		20
B 17.9
(3)
A 		11.9
(0.6)
A 		2.6
(-3)
A 		11.3
(0.4)
A 		15
C 3.9
(-2.6)
A 		11.7
(-0.3)
A 		2.6
(-3)
A 		22.7
(3)
P 		20
avr 14.4
(1.3) 		8.7
(-1) 		3.8
(-3) 		18.7
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.2
(-3)
A 		3.1
(-2.4)
A 		9.1
(1.5)
A 		8
(0.8)
A 		11.4
(3)
A 		6.7
(-0.1)
A 		9
B 4.5
(-1.8)
A 		5.8
(-1.1)
A 		7.8
(-0.1)
A 		14
(3)
A 		2.1
(-3)
A 		13
(2.5)
A 		12
C 20.6
(2.1)
A 		23.9
(3)
A 		2.1
(-3)
A 		2
(-3)
A 		11.4
(-0.4)
A 		2
(-3)
A 		22
avr 9.1
(0.7) 		10.9
(3) 		6.3
(-3) 		8
(-0.8) 		8.3
(-0.4) 		7.2
(-1.8) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3610
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.20 NCBI
Target Description Y57A10A.20 /REP_DB=WormBase Gene ID /WP=CE22623 /TR=Q9NA80 /GB=CAB55023.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064195
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064195 NCBI Caenorhabditis elegans Y57A10A.20 (Y57A10A.20) mRNA, complete cds. None
GENEFINDER00000026061 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12225261:12233986:1 None
Y57A10A.20 ENSEMBL cdna:known chromosome:CEL140:II:12228222:12233986:1 gene:Y57A10A.20 None
SNAP00000026027 ENSEMBL cdna:SNAP chromosome:CEL140:II:12227197:12236477:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12228218-12233983(+) 93.14 100.0
Public Domain and Genome References
Gene Title
Gene Symbol sinh-1
Ensembl Y57A10A.20
Entrez Gene 190339 Entrez gene
SwissProt Q9NA80 EMBL-EBI
WormBase CE35685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55023 Hypothetical protein Y57A10A.20 [Caenorhabditis elegans] ref|NP_496596.2| Y57A10A.20 [Caenorhabditis elegans] 0.0
blast CAE73472 Hypothetical protein CBG20923 [Caenorhabditis briggsae] 0.0
blast CAE73472 Hypothetical protein CBG20923 [Caenorhabditis briggsae] 1.0E-170
blast CAE73472 Hypothetical protein CBG20923 [Caenorhabditis briggsae] 1.0E-128
blast CAB60765 Hypothetical protein Y57A10A.19 [Caenorhabditis elegans] ref|NP_496595.1| Y57A10A.19 [Caenorhabditis elegans] 1.0E-95
blast CAB55024 Hypothetical protein Y57A10A.21 [Caenorhabditis elegans] ref|NP_496597.1| SR protein related family member (rsr-2) [Caenorhabditis elegans] 4.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 8.6E-34
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 1.0E-126
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 9.4E-7
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 8.6E-34
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 1.0E-126
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 9.4E-7
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 2.2E-64
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 1.0E-126
Pfam IPR008828 EMBL-EBI Stress-activated map kinase interacting 1 9.4E-7
Sequence
Target Sequence 
>C. ELEGANS:187130_AT
tgccgaatagcccaatcgcggcgggacccatgacaccattgccaacggtaatggaggaga
gcccggcggtggcaggcacttccaatggattcggtttccctaaagctgaaagttgtgggg
caattgcactttttttcgagttctctttttttcgaattttccggtttttaaatacatttt
gcattgaaaaacggttttttttttcggaaaattttccgatttttcaacgaaaatttgtga
aaaaaaccgctaaaaattggaatttttgcaaattttgtttaaaaaatcgaaaaatttttt
tttttaaattttttaaattttttcattttttcattttccacaaattctattgcctgcatc
gtgccaggcttgtcaagagctttcaaatgcaccccatatcgactaggttcggcctgaatt
acccccactttttgggtcccaccacgaaagcctacagtaacccggagggttttcgtgctt
ctacaccaggagtgacatggaatgatgatggaggccaactttcttcgtttattgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGAATAGCCCAATCGCGGCGGG 274 585 1475 Antisense
CCCATGACACCATTGCCAACGGTAA 570 257 1501 Antisense
GTGGCAGGCACTTCCAATGGATTCG 605 491 1543 Antisense
TGGATTCGGTTTCCCTAAAGCTGAA 72 549 1560 Antisense
ATTGCACTTTTTTTCGAGTTCTCTT 627 5 1597 Antisense
CAAATTCTATTGCCTGCATCGTGCC 71 195 1815 Antisense
GCATCGTGCCAGGCTTGTCAAGAGC 93 309 1830 Antisense
TCAAGAGCTTTCAAATGCACCCCAT 201 631 1847 Antisense
GCACCCCATATCGACTAGGTTCGGC 391 315 1863 Antisense
TTTTCGTGCTTCTACACCAGGAGTG 250 677 1944 Antisense
GGCCAACTTTCTTCGTTTATTGTGC 298 541 1987 Antisense
Sequence Source Affymetrix Proprietary Database