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[187129_at]

Description T09B9.5 /REP_DB=WormBase Gene ID /WP=CE01653 /TR=SW:Q09351 /GB=CAA87342.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 29      6grp_total > 92      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 67.7
(-3)
P 		200.9
(3)
P 		132
(-0.1)
A 		179.6
(2)
P 		133
B 125.2
(0.8)
P 		145.6
(3)
A 		101.9
(-1.6)
A 		89.2
(-3)
A 		56
C 92.3
(-3)
P 		121.4
(-0.8)
A 		124.1
(-0.6)
P 		173.3
(3)
P 		81
avr 95.1
(-3) 		156
(3) 		119.3
(-0.6) 		147.4
(2.2) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 106.5
(0.3)
A 		98.6
(-0.6)
P 		112.5
(0.9)
P 		75.5
(-3)
P 		132.1
(3)
P 		92.9
(-1.2)
P 		57
B 78.1
(-2)
A 		144.8
(3)
P 		64.1
(-3)
A 		114.1
(0.7)
P 		122.7
(1.4)
P 		75.7
(-2.1)
P 		81
C 102.7
(0.3)
A 		130.1
(2.4)
P 		73.4
(-1.9)
P 		138.5
(3)
P 		118.5
(1.5)
P 		58.9
(-3)
P 		80
avr 95.8
(-0.5) 		124.5
(3) 		83.3
(-2.1) 		109.4
(1.1) 		124.4
(3) 		75.8
(-3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 24.7
(-3)
P 		43.6
(3)
P 		34.5
(0.1)
A 		26.3
(-2.5)
P 		19
B 39.9
(3)
P 		36
(1.9)
A 		23.6
(-1.7)
A 		19
(-3)
A 		21
C 30.5
(-2.4)
P 		34.9
(-0.6)
A 		43.3
(3)
P 		29.2
(-3)
P 		14
avr 31.7
(0.1) 		38.2
(3) 		33.8
(1) 		24.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 19.6
(-2.9)
A 		35.1
(1.6)
P 		24.5
(-1.5)
P 		19.2
(-3)
P 		39.9
(3)
P 		22.6
(-2)
P 		21
B 27.2
(-1)
A 		48.2
(2.7)
P 		15.6
(-3)
A 		30.2
(-0.4)
P 		49.9
(3)
P 		28.2
(-0.8)
P 		34
C 38.1
(2.5)
A 		39.7
(3)
P 		18.7
(-3)
P 		27.9
(-0.4)
P 		38.3
(2.6)
P 		19.7
(-2.7)
P 		21
avr 28.3
(-0.7) 		41
(2.6) 		19.6
(-3) 		25.8
(-1.4) 		42.7
(3) 		23.5
(-2) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16711
Sequence Type Exemplar sequence
Representative Public ID T09B9.5 NCBI
Target Description T09B9.5 /REP_DB=WormBase Gene ID /WP=CE01653 /TR=SW:Q09351 /GB=CAA87342.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077240(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077240 NCBI Caenorhabditis elegans T09B9.5 (T09B9.5) mRNA, complete cds. 11/11 None
T09B9.5 ENSEMBL cdna:known chromosome:CEL140:X:9777785:9780182:1 gene:T09B9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011006 8/11 Cross Hyb Matching Probes None
SNAP00000011002 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9777784-9780182(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B9.5
Entrez Gene 188322 Entrez gene
SwissProt Q09351 EMBL-EBI
WormBase CE01653 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87342 Hypothetical protein T09B9.5 [Caenorhabditis elegans] ref|NP_509641.1| T09B9.5 [Caenorhabditis elegans] sp|Q09351|YRU5_CAEEL Hypothetical protein T09B9.5 in chromosome X 0.0
blast CAE58710 Hypothetical protein CBG01894 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509641.1 7 22-44,57-79,101-123,136-158,187-209,230-252,267-289
T09B9.5 7 22-44,57-79,101-123,136-158,187-209,230-252,267-289
Sequence
Target Sequence 
>C. ELEGANS:187129_AT
tcaattcttcttgcagtatcccagtcgtacttgacgttttccttattaacattgctgatt
ctgctccacgccactggtttaattttcatcatgttagcaagcgttctgcaacgagacaag
aaaagctggatttcatttacgatattttcattgaaagagattttcaaatatgagacactc
gcctggcagatatcactatttatctcaggatgcgtggttttataccgtcacgttttgaga
gaatcttgtgacgagtgcgctgtgatagtactggaactagcgtttctgatagtaccacta
ttaatttcatttatgcatcccctttacttaatatggtacgtactgccgatgagagatgca
gctaccaggacgtttccatgtatgttgtctgcgttaccagagtactcattggtaccaccg
caagttccgtcggctagcacttcagcaacattcgccattcaaagtccaagggcagatctc
actccgaatgataca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTCTTCTTGCAGTATCCCAGT 11 635 532 Antisense
GTATCCCAGTCGTACTTGACGTTTT 200 441 547 Antisense
TTAACATTGCTGATTCTGCTCCACG 636 683 577 Antisense
GCTCCACGCCACTGGTTTAATTTTC 5 297 594 Antisense
GAGACACTCGCCTGGCAGATATCAC 194 393 703 Antisense
ATTTATGCATCCCCTTTACTTAATA 697 15 840 Antisense
GAGATGCAGCTACCAGGACGTTTCC 208 397 884 Antisense
TACTCATTGGTACCACCGCAAGTTC 149 643 934 Antisense
GTCGGCTAGCACTTCAGCAACATTC 21 473 960 Antisense
CAACATTCGCCATTCAAAGTCCAAG 613 187 977 Antisense
GGCAGATCTCACTCCGAATGATACA 149 537 1002 Antisense
Sequence Source Affymetrix Proprietary Database