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[187128_at]

Description Y39F10A.2 /REP_DB=WormBase Gene ID /WP=CE21726 /TR=Q9TYN9 /GB=AAD12816.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 26.3
(-2.8)
A 		24.4
(-3)
A 		68.2
(1.2)
A 		87.5
(3)
P 		63
B 28.9
(-3)
A 		73.2
(3)
A 		40
(-1.5)
P 		31.7
(-2.6)
A 		44
C 40.2
(-1.8)
A 		15
(-3)
A 		18.6
(-2.8)
A 		143.7
(3)
P 		129
avr 31.8
(-3) 		37.5
(-2.4) 		42.3
(-1.9) 		87.6
(3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 40.3
(0.8)
A 		57
(3)
A 		13.7
(-2.8)
A 		12.3
(-3)
A 		31
(-0.5)
A 		44.4
(1.3)
P 		45
B 19.6
(-0.9)
A 		38.8
(3)
A 		9.5
(-3)
A 		14
(-2.1)
A 		10.5
(-2.8)
A 		23.3
(-0.2)
A 		29
C 31.8
(-0.3)
A 		52.6
(3)
M 		14.2
(-3)
A 		19.6
(-2.2)
A 		15.9
(-2.7)
A 		24.3
(-1.4)
A 		38
avr 30.6
(-0.1) 		49.5
(3) 		12.5
(-3) 		15.3
(-2.5) 		19.1
(-1.9) 		30.7
(-0) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 9.6
(-0.9)
A 		5.3
(-3)
A 		17.8
(3)
A 		12.8
(0.6)
P 		13
B 9.2
(-1.7)
A 		18.1
(3)
A 		9.3
(-1.7)
P 		6.8
(-3)
A 		11
C 13.3
(-0.3)
A 		4.3
(-3)
A 		6.5
(-2.3)
A 		24.2
(3)
P 		20
avr 10.7
(-1.3) 		9.2
(-3) 		11.2
(-0.8) 		14.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 7.4
(-1.5)
A 		20.3
(3)
A 		3
(-3)
A 		3.1
(-3)
A 		9.4
(-0.8)
A 		10.8
(-0.3)
P 		17
B 6.8
(-0.5)
A 		12.9
(3)
A 		2.3
(-3)
A 		3.7
(-2.2)
A 		4.3
(-1.9)
A 		8.7
(0.6)
A 		11
C 11.8
(1)
A 		16
(3)
M 		3.6
(-3)
A 		3.9
(-2.9)
A 		5.1
(-2.3)
A 		8.1
(-0.8)
A 		12
avr 8.7
(-0.4) 		16.4
(3) 		3
(-3) 		3.6
(-2.7) 		6.3
(-1.5) 		9.2
(-0.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5698
Sequence Type Exemplar sequence
Representative Public ID Y39F10A.2 NCBI
Target Description Y39F10A.2 /REP_DB=WormBase Gene ID /WP=CE21726 /TR=Q9TYN9 /GB=AAD12816.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061405 NCBI Caenorhabditis elegans Y39F10A.2 (Y39F10A.2) mRNA, complete cds. 11/11 None
Y39F10A.2 ENSEMBL cdna:known chromosome:CEL140:II:779386:781701:-1 gene:Y39F10A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000004794 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:779385-781701(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39F10A.2
Entrez Gene 189758 Entrez gene
SwissProt Q9TYN9 EMBL-EBI
WormBase CE21726 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12816 Hypothetical protein Y39F10A.2 [Caenorhabditis elegans] ref|NP_493806.1| Y39F10A.2 [Caenorhabditis elegans] 0.0
blast CAB16868 Hypothetical protein F08A8.5 [Caenorhabditis elegans] ref|NP_493265.1| F08A8.5 [Caenorhabditis elegans] 2.0E-36
blast AAY43979 Hypothetical protein ZK563.7 [Caenorhabditis elegans] ref|NP_001024997.1| ZK563.7 [Caenorhabditis elegans] 1.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR009283 EMBL-EBI Apyrase 2.2E-27
Sequence
Target Sequence 
>C. ELEGANS:187128_AT
gatgggcactatttccagagcttcaagtactttgaccatttgcgtcctcagatcctacag
tggctggctccaacgaataccacgacgttgaaagcaataagtttgctcccggtgttggtt
agaagagagttcaaaatctgtgttcacatccggcgaggcgatttccaattcgacggggtt
cacgaaccaacagatgctacattcaccagaaacgccgtagactacctaatccggaaatat
caaagttttcatccaaaagttagtgtaatagtgttaggaaatgatgagaagtttgcgtac
actatttttgaaggctccaactttctcctaaccacttccgactgcttctgtgatactaaa
gttgtaaaaattggaaagttaaatcccgaaaaaggcttcagtgcttttcagtttgtcccg
gggactaatgatactgtaattgtggctttgaagacttcagaaattccaaaaaatccgccc
ggaggcacatatctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGCACTATTTCCAGAGCTTCA 237 409 355 Antisense
TACTTTGACCATTTGCGTCCTCAGA 694 645 382 Antisense
GTCCTCAGATCCTACAGTGGCTGGC 389 477 398 Antisense
GTGGCTGGCTCCAACGAATACCACG 588 489 414 Antisense
GTTTGCTCCCGGTGTTGGTTAGAAG 454 445 455 Antisense
CGGCGAGGCGATTTCCAATTCGACG 198 241 505 Antisense
GAAACGCCGTAGACTACCTAATCCG 674 351 563 Antisense
TTTGAAGGCTCCAACTTTCTCCTAA 249 665 661 Antisense
CACTTCCGACTGCTTCTGTGATACT 427 197 687 Antisense
AAGGCTTCAGTGCTTTTCAGTTTGT 314 159 746 Antisense
AAATCCGCCCGGAGGCACATATCTT 612 117 825 Antisense
Sequence Source Affymetrix Proprietary Database