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[187127_s_at]

Description Y55H10A.2 /REP_DB=WormBase Gene ID /WP=CE19629 /TR=Q9TYW2 /GB=AAC69003.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 28      4grp_total > 22      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 89.5
(-0.3)
A 		57
(-1.4)
A 		9.9
(-3)
A 		183.6
(3)
P 		174
B 127.4
(3)
A 		75.1
(-2.8)
A 		73.6
(-3)
A 		97.1
(-0.4)
P 		54
C 125.4
(3)
A 		33.9
(-3)
A 		41.8
(-2.5)
A 		94.9
(1)
P 		92
avr 114.1
(2.2) 		55.3
(-2) 		41.8
(-3) 		125.2
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 171.7
(3)
A 		86.9
(-0.2)
A 		72.2
(-0.7)
A 		10.3
(-3)
A 		73.1
(-0.7)
A 		31.6
(-2.2)
A 		161
B 121.2
(3)
A 		68.7
(0)
A 		39.5
(-1.7)
A 		16.2
(-3)
A 		81.4
(0.7)
A 		113.3
(2.5)
A 		105
C 102.2
(1.5)
A 		101
(1.3)
A 		112.8
(3)
A 		77.2
(-2.1)
A 		83.4
(-1.2)
A 		70.7
(-3)
A 		42
avr 131.7
(3) 		85.5
(0.1) 		74.8
(-0.5) 		34.6
(-3) 		79.3
(-0.2) 		71.9
(-0.7) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 32.6
(3)
A 		12.4
(-1)
A 		2.6
(-3)
A 		26.9
(1.9)
P 		30
B 40.6
(3)
A 		18.6
(-2.6)
A 		17
(-3)
A 		20.7
(-2.1)
P 		24
C 41.5
(3)
A 		9.8
(-3)
A 		14.6
(-2.1)
A 		16
(-1.8)
P 		32
avr 38.2
(3) 		13.6
(-2.5) 		11.4
(-3) 		21.2
(-0.8) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 31.6
(3)
A 		30.9
(2.9)
A 		15.7
(-0.3)
A 		2.6
(-3)
A 		22
(1)
A 		7.7
(-1.9)
A 		29
B 42.2
(3)
A 		22.9
(-0.1)
A 		9.6
(-2.2)
A 		4.3
(-3)
A 		33.1
(1.5)
A 		42.3
(3)
A 		38
C 37.9
(3)
A 		30.8
(1.1)
A 		28.7
(0.5)
A 		15.5
(-3)
A 		27
(0.1)
A 		23.7
(-0.8)
A 		22
avr 37.2
(3) 		28.2
(1.2) 		18
(-0.9) 		7.5
(-3) 		27.4
(1) 		24.6
(0.5) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187127_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10519
Sequence Type Exemplar sequence
Representative Public ID Y55H10A.2 NCBI
Target Description Y55H10A.2 /REP_DB=WormBase Gene ID /WP=CE19629 /TR=Q9TYW2 /GB=AAC69003.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067930(11), NM_067929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067930 NCBI Caenorhabditis elegans Y55H10A.2 (Y55H10A.2) mRNA, complete cds. 11/11 A 
NM_067929 NCBI Caenorhabditis elegans F42A6.1 (F42A6.1) mRNA, complete cds. 11/11 None
SNAP00000012664 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3355071:3357529:1 10/11 None
SNAP00000012665 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3364227:3366057:1 10/11 None
GENEFINDER00000012670 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3363549:3366057:1 10/11 None
GENEFINDER00000012671 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3355053:3357529:1 10/11 None
F42A6.1 ENSEMBL cdna:known chromosome:CEL140:IV:3355053:3357547:1 gene:F42A6.1 11/11 None
Y55H10A.2 ENSEMBL cdna:known chromosome:CEL140:IV:3363549:3366109:1 gene:Y55H10A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3363554-3366115(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl F42A6.1
Y55H10A.2
Entrez Gene 185645 Entrez gene
190324 Entrez gene
SwissProt O44491 EMBL-EBI
Q9TYW2 EMBL-EBI
WormBase CE34558 Wormbase
CE19629 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69003 Hypothetical protein Y55H10A.2 [Caenorhabditis elegans] ref|NP_500331.1| Y55H10A.2 [Caenorhabditis elegans] 0.0
blast AAC69003 Hypothetical protein Y55H10A.2 [Caenorhabditis elegans] ref|NP_500331.1| Y55H10A.2 [Caenorhabditis elegans] 1.0E-176
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-173
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-168
blast CAE73584 Hypothetical protein CBG21061 [Caenorhabditis briggsae] 1.0E-167
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-165
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-162
blast AAC69003 Hypothetical protein Y55H10A.2 [Caenorhabditis elegans] ref|NP_500331.1| Y55H10A.2 [Caenorhabditis elegans] 1.0E-159
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500331.1 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
NP_500330.2 7 10-29,42-64,74-96,105-127,152-174,198-220,230-252
F42A6.1 7 10-29,42-64,74-96,105-127,152-174,198-220,230-252
Y55H10A.2 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
SNAP00000012664 7 4-23,36-58,68-90,99-121,146-168,192-214,224-246
SNAP00000012665 5 5-27,36-58,83-105,129-151,161-183
GENEFINDER00000012670 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
GENEFINDER00000012671 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
Sequence
Target Sequence 
>C. ELEGANS:187127_S_AT
gaatcatcgctaacatggcatctgcagttatctactttgtaattcttctgtatttgaaga
aaagtcaaggcggcgcgctgaaagagctctctccccaacagctgaaaatgcatcgaaatg
cgaaaatcacgctgggcatggttacgactaactcgatgattttgttgttgttcccggata
ttttgctattcgcgaatccatggaacatcacaaagttctactcaacaccgctgtacacta
tgactctgagcaaaactatggtgaacttcatgatctacatgattcgataccgtgagctcc
gaaacatcattcttttcaaaatcatcgcctgccttcctcaaaaatggtcgataccactgg
cgatgaagcttcggagcaccgccgaagcctcaaatgcgccgaaaagtgcgtttcagacac
gatcctcggttcagactgagagacatcgccgaggaagagcatcgttccacgctctggatc
tatcgttggaattcaaaaacctcgagttttacaacaagaaatttccaaaggaccactaca
tttaccgccgttgccaagccgattctgatttgtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCATCGCTAACATGGCATCTGC 524 327 548 Antisense
GGCATCTGCAGTTATCTACTTTGTA 50 537 564 Antisense
TCTCTCCCCAACAGCTGAAAATGCA 265 611 635 Antisense
ATCACGCTGGGCATGGTTACGACTA 547 25 673 Antisense
ATGATTTTGTTGTTGTTCCCGGATA 16 47 703 Antisense
TTCCCGGATATTTTGCTATTCGCGA 582 697 718 Antisense
TCAACACCGCTGTACACTATGACTC 183 631 769 Antisense
GCCGAGGAAGAGCATCGTTCCACGC 322 285 995 Antisense
TTCCACGCTCTGGATCTATCGTTGG 569 699 1012 Antisense
TCCAAAGGACCACTACATTTACCGC 664 585 1071 Antisense
GTTGCCAAGCCGATTCTGATTTGTT 256 441 1097 Antisense
Sequence Source Affymetrix Proprietary Database