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[187126_at]

Description Y55H10A.2 /REP_DB=WormBase Gene ID /WP=CE19629 /TR=Q9TYW2 /GB=AAC69003.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 14      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 72.3
(1.1)
A 		16.2
(-2.3)
A 		5.5
(-3)
A 		103.9
(3)
A 		98
B 32.8
(1.2)
A 		6.5
(-3)
A 		13
(-2)
A 		43.7
(3)
A 		37
C 42.5
(1.4)
A 		20.7
(-1.5)
A 		9
(-3)
A 		54.9
(3)
A 		46
avr 49.2
(1.1) 		14.5
(-2.5) 		9.2
(-3) 		67.5
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 50.7
(3)
A 		30.5
(0.1)
A 		9
(-3)
A 		14.2
(-2.3)
A 		20.8
(-1.3)
A 		45.8
(2.3)
M 		42
B 51.3
(3)
P 		35.8
(0.7)
A 		24.9
(-0.9)
A 		10.9
(-3)
A 		38.3
(1.1)
A 		26.5
(-0.7)
A 		40
C 35.7
(-0.1)
A 		65.3
(3)
P 		37.7
(0.1)
A 		50
(1.4)
A 		8.6
(-3)
A 		28.9
(-0.9)
A 		57
avr 45.9
(3) 		43.9
(2.5) 		23.9
(-2.7) 		25
(-2.4) 		22.6
(-3) 		33.7
(-0.1) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.3
(3)
A 		3.5
(-2.5)
A 		1.4
(-3)
A 		15.2
(0.3)
A 		25
B 10.5
(3)
A 		1.6
(-3)
A 		3
(-2.1)
A 		9.3
(2.2)
A 		9
C 14.1
(3)
A 		6
(-1.4)
A 		3.1
(-3)
A 		9.3
(0.4)
A 		11
avr 17
(3) 		3.7
(-2.5) 		2.5
(-3) 		11.3
(0.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 9.4
(1.8)
A 		10.8
(2.7)
A 		2
(-3)
A 		3.6
(-2)
A 		6.3
(-0.2)
A 		11.2
(3)
M 		9
B 17.9
(3)
P 		11.9
(0.6)
A 		6
(-1.8)
A 		2.9
(-3)
A 		15.6
(2.1)
A 		9.9
(-0.2)
A 		15
C 13.2
(0.6)
A 		19.9
(3)
P 		9.6
(-0.6)
A 		10.1
(-0.4)
A 		2.8
(-3)
A 		9.7
(-0.6)
A 		17
avr 13.5
(2.5) 		14.2
(3) 		5.9
(-2.7) 		5.5
(-3) 		8.2
(-1.1) 		10.3
(0.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187126_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10519
Sequence Type Exemplar sequence
Representative Public ID Y55H10A.2 NCBI
Target Description Y55H10A.2 /REP_DB=WormBase Gene ID /WP=CE19629 /TR=Q9TYW2 /GB=AAC69003.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067930(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067930 NCBI Caenorhabditis elegans Y55H10A.2 (Y55H10A.2) mRNA, complete cds. 11/11 A 
SNAP00000012665 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3364227:3366057:1 10/11 None
GENEFINDER00000012670 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3363549:3366057:1 10/11 None
Y55H10A.2 ENSEMBL cdna:known chromosome:CEL140:IV:3363549:3366109:1 gene:Y55H10A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3363554-3366115(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y55H10A.2
Entrez Gene 190324 Entrez gene
SwissProt Q9TYW2 EMBL-EBI
WormBase CE19629 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69003 Hypothetical protein Y55H10A.2 [Caenorhabditis elegans] ref|NP_500331.1| Y55H10A.2 [Caenorhabditis elegans] 0.0
blast AAC69003 Hypothetical protein Y55H10A.2 [Caenorhabditis elegans] ref|NP_500331.1| Y55H10A.2 [Caenorhabditis elegans] 1.0E-176
blast CAE73584 Hypothetical protein CBG21061 [Caenorhabditis briggsae] 1.0E-167
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-162
blast CAE73584 Hypothetical protein CBG21061 [Caenorhabditis briggsae] 1.0E-157
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-142
blast AAB92046 Hypothetical protein F42A6.1 [Caenorhabditis elegans] ref|NP_500330.2| F42A6.1 [Caenorhabditis elegans] 1.0E-128
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500331.1 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
Y55H10A.2 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
SNAP00000012665 5 5-27,36-58,83-105,129-151,161-183
GENEFINDER00000012670 7 10-29,41-63,93-115,128-150,175-197,221-243,253-275
Sequence
Target Sequence 
>C. ELEGANS:187126_AT
gattcgataccgtgagctccgaaacatcattcttttcaaaatcatcgcctgccttcctca
aaaatggtcgataccactggcgatgaagcttcggagcaccgccgaagcctcaaatgcgcc
gaaaagtgcgtttcagacacgatcctcggttcagactgagagacatcgccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCGATACCGTGAGCTCCGAAAC 278 433 828 Antisense
GAGCTCCGAAACATCATTCTTTTCA 684 385 841 Antisense
ATTCTTTTCAAAATCATCGCCTGCC 403 11 856 Antisense
CGCCTGCCTTCCTCAAAAATGGTCG 74 257 873 Antisense
GCCTTCCTCAAAAATGGTCGATACC 212 281 878 Antisense
GGTCGATACCACTGGCGATGAAGCT 620 501 893 Antisense
ATGCGCCGAAAAGTGCGTTTCAGAC 325 41 941 Antisense
AAAGTGCGTTTCAGACACGATCCTC 64 123 950 Antisense
TTCAGACACGATCCTCGGTTCAGAC 190 687 959 Antisense
ACACGATCCTCGGTTCAGACTGAGA 471 109 964 Antisense
GGTTCAGACTGAGAGACATCGCCGA 561 505 975 Antisense
Sequence Source Affymetrix Proprietary Database