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[187125_s_at]

Description R08D7.3 /REP_DB=WormBase Gene ID /WP=CE00291 /TR=SW:P30642 /GB=CAA78049.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 94      6grp_high1_10_10 > 59      4grp_highest_8_8 > 19      4grp_high_8_8 > 63      6grp_highest_nonorm > 68      6grp_total > 49      4grp_total > 40      6grp_highest_sub > Cu      6grp_cgc > 18      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 766
1 2 3 4 range
A 3393.6
(-0.4)
P 		3203.3
(-3)
P 		3653.2
(3)
P 		3199.8
(-3)
P 		453
B 3030.9
(-3)
P 		3424.5
(2.3)
P 		3420.9
(2.2)
P 		3478.2
(3)
P 		447
C 3030.9
(-2.8)
P 		3005.9
(-3)
P 		3771.7
(3)
P 		3103.2
(-2.2)
P 		766
avr 3151.8
(-3) 		3211.2
(-2.2) 		3615.3
(3) 		3260.4
(-1.6) 		464

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1249
1 2 3 4 5 6 range
A 2112
(1.3)
P 		2094
(1.1)
P 		1539.5
(-3)
P 		2087.3
(1.1)
P 		2172.6
(1.7)
P 		2342.2
(3)
P 		803
B 2561.2
(3)
P 		2311.2
(1.2)
P 		1718.5
(-3)
P 		2037
(-0.7)
P 		2287.5
(1.1)
P 		2487.5
(2.5)
P 		843
C 2344.1
(1.3)
P 		2298.9
(1)
P 		2176.2
(0.4)
P 		1459.2
(-3)
P 		2277.5
(0.9)
P 		2708.2
(3)
P 		1249
avr 2339.1
(1.5) 		2234.7
(0.6) 		1811.4
(-3) 		1861.2
(-2.6) 		2245.9
(0.7) 		2512.6
(3) 		701
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 846
1 2 3 4 range
A 1235.6
(3)
P 		695.3
(-1.2)
P 		955
(0.8)
P 		468.4
(-3)
P 		767
B 966.5
(3)
P 		845.8
(-0.2)
P 		792.7
(-1.6)
P 		741.2
(-3)
P 		225
C 1003.3
(0.6)
P 		864.2
(-0.4)
P 		1314.5
(3)
P 		523.2
(-3)
P 		791
avr 1068.5
(3) 		801.8
(-0.3) 		1020.7
(2.4) 		577.6
(-3) 		491

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 636
1 2 3 4 5 6 range
A 389.3
(-2.2)
P 		744.7
(3)
P 		335.3
(-3)
P 		529.4
(-0.2)
P 		655.6
(1.7)
P 		570.3
(0.4)
P 		409
B 891.2
(2.6)
P 		769.3
(1.1)
P 		417.3
(-3)
P 		539.5
(-1.6)
P 		929.4
(3)
P 		927.6
(3)
P 		512
C 868.8
(2.6)
P 		701.5
(1)
P 		553.9
(-0.5)
P 		293.5
(-3)
P 		737
(1.3)
P 		906.6
(3)
P 		613
avr 716.4
(1.6) 		738.5
(2) 		435.5
(-3) 		454.1
(-2.7) 		774
(2.5) 		801.5
(3) 		366
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187125_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7345
Sequence Type Exemplar sequence
Representative Public ID R08D7.3 NCBI
Target Description R08D7.3 /REP_DB=WormBase Gene ID /WP=CE00291 /TR=SW:P30642 /GB=CAA78049.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066583(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066583 NCBI Caenorhabditis elegans Eukaryotic Initiation Factor family member (eif-3.D) (eif-3.D) mRNA, complete cds. 11/11 A 
SNAP00000003055 ENSEMBL cdna:SNAP chromosome:CEL140:III:8969634:8971481:-1 11/11 None
GENEFINDER00000003068 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8969634:8971481:-1 11/11 None
R08D7.3.1 ENSEMBL cdna:known chromosome:CEL140:III:8969551:8971483:-1 gene:R08D7.3 11/11 None
R08D7.3.2 ENSEMBL cdna:known chromosome:CEL140:III:8969551:8971489:-1 gene:R08D7.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8969629-8971477(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol eif-3.D
Ensembl R08D7.3
Entrez Gene 176268 Entrez gene
SwissProt P30642 EMBL-EBI
WormBase CE00291 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249040_AT eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative at
CANINE:1591570_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE:1585258_S_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE:1585257_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
CANINE_2:CFA.12460.1.A1_S_AT similar to eukaryotic translation initiation factor 3 subunit 7 cfa
DROSOPHILA_2:1630063_A_AT Eukaryotic initiation factor 3 p66 subunit dm
DROSGENOME1:153314_AT Eukaryotic initiation factor 3 p66 subunit dm
PLASMODIUM_ANOPHELES:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-FOCUS:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133_PLUS_2:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133A:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133B:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U133A_2:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
U133_X3P:200005_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U95AV2:35298_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBA:AA094800_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBC:RC_R48608_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBD:RC_W38173_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
U133_X3P:G4503522_3P_AT eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HG-U95B:48688_AT Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
HU35KSUBB:RC_T95909_AT Eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa hs
MOE430A:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MOUSE430_2:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MOUSE430A_2:1416100_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MU11KSUBB:Z31134_S_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MG-U74AV2:99101_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MG-U74BV2:165354_R_AT eukaryotic translation initiation factor 3, subunit 7 (zeta) mm
MU19KSUBC:TC39172_AT Eukaryotic translation initiation factor 3, subunit 7 (zeta) (Eif3s7), mRNA mm
RG-U34A:RC_AA891553_AT eukaryotic translation initiation factor 3 subunit 7 rn
RAE230A:1388568_AT eukaryotic translation initiation factor 3 subunit 7 rn
RAT230_2:1388568_AT eukaryotic translation initiation factor 3 subunit 7 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6413 translational initiation inferred from electronic annotation QuickGO AmiGO
6413 translational initiation inferred from sequence similarity QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5852 eukaryotic translation initiation factor 3 complex inferred from sequence similarity QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3743 translation initiation factor activity inferred from electronic annotation QuickGO AmiGO
3743 translation initiation factor activity inferred from sequence similarity QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA78049 Hypothetical protein R08D7.3 [Caenorhabditis elegans] ref|NP_498984.1| Eukaryotic Initiation Factor family member (eif-3.D) [Caenorhabditis elegans] sp|P30642|IF37_CAEEL Putative eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3d) 0.0
blast CAE62694 Hypothetical protein CBG06842 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007783 EMBL-EBI Eukaryotic translation initiation factor 3, subunit 7 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:187125_S_AT
gaatgctcgtgctccattcgaagacgaggagactggagagtcaggaactgcttacaaata
ccgtaagtggaatcttggaaacggagttgatggaaaaccagttgagttggtttgccgtac
agaattggatggagttattcacggactcggaaatgagactcagactcttacaatcaaggc
attcaacgaatgggatagcacacaatctggaggtgtcgactggagaacaaagcttgatgt
tcaaaagggagccgtaatggccaccgaaatcaagaacaactcagctaaggttgcaaagtg
gactctgcaagcacttcttgccggttccgacacaatgaagctcggatatgtgtctcgtaa
caatgcacgcagcacacaaaatcattctattctactcacccaatacgtaaagccaacgga
gtttgctagcaacatcgccttgaacatggataactgctggggaattcttagatgcgtcat
tgacagttgtatgaagcaaaaaccaggaaagtacttgttgatgaaggatccacaatctcc
ggttatccgcctttattcgcttccagaaggaactttcgaaagcgagcgcgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCTCGTGCTCCATTCGAAGAC 389 331 1098 Antisense
GACTGGAGAGTCAGGAACTGCTTAC 346 375 1128 Antisense
CAGTTGAGTTGGTTTGCCGTACAGA 295 207 1196 Antisense
GGATGGAGTTATTCACGGACTCGGA 698 513 1224 Antisense
GACTCAGACTCTTACAATCAAGGCA 7 375 1254 Antisense
AGGGAGCCGTAATGGCCACCGAAAT 326 59 1343 Antisense
GACTCTGCAAGCACTTCTTGCCGGT 122 375 1398 Antisense
TGCCGGTTCCGACACAATGAAGCTC 437 583 1416 Antisense
GAAGCTCGGATATGTGTCTCGTAAC 237 343 1434 Antisense
GTGTCTCGTAACAATGCACGCAGCA 707 485 1447 Antisense
GGAACTTTCGAAAGCGAGCGCGAGA 409 529 1666 Antisense
Sequence Source Affymetrix Proprietary Database