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[187124_s_at]

Description K01A2.11B /REP_DB=WormBase Gene ID /WP=CE19521 /TR=Q9TZ47 /GB=AAC69511.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 81      4grp_highest_8_8 > 01      4grp_high_8_8 > 53      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 58      6grp_highest_sub > 04_05      6grp_cgc > 86      6grp_high1_sub > 04      6grp_cgc_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 379
1 2 3 4 range
A 197.7
(-0.9)
P 		389
(3)
P 		348.3
(2.2)
P 		92.6
(-3)
P 		296
B 234
(-1)
P 		469.6
(3)
P 		347.7
(0.9)
P 		117
(-3)
P 		353
C 229.1
(-0.3)
P 		396
(3)
P 		380.8
(2.7)
P 		91.1
(-3)
P 		305
avr 220.3
(-0.7) 		418.2
(3) 		358.9
(1.9) 		100.2
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 211.7
(-2.2)
P 		280.1
(-1.5)
P 		267.1
(-1.6)
P 		692.1
(3)
P 		464.1
(0.5)
P 		140.4
(-3)
P 		552
B 253.5
(-1.7)
P 		257
(-1.7)
P 		212.9
(-2.2)
P 		645
(3)
P 		480.9
(1)
P 		145.9
(-3)
P 		499
C 282.4
(-1.7)
P 		301.2
(-1.5)
P 		257.1
(-2)
P 		701
(3)
P 		566.8
(1.5)
P 		170
(-3)
P 		531
avr 249.2
(-1.9) 		279.4
(-1.6) 		245.7
(-1.9) 		679.4
(3) 		503.9
(1) 		152.1
(-3) 		527
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 72
(1.5)
P 		84.4
(2.5)
P 		91.1
(3)
P 		13.6
(-3)
P 		78
B 74.6
(0.3)
P 		116
(3)
P 		80.6
(0.7)
P 		24.9
(-3)
P 		91
C 75.8
(0.1)
P 		113.9
(2)
P 		132.7
(3)
P 		15.4
(-3)
P 		117
avr 74.1
(0.9) 		104.8
(3) 		101.5
(2.8) 		18
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 39
(-2.8)
P 		99.6
(-0.2)
P 		58.2
(-2)
P 		175.5
(3)
P 		140
(1.5)
P 		34.2
(-3)
P 		141
B 88.2
(-1.5)
P 		85.5
(-1.6)
P 		51.7
(-3)
P 		170.8
(2)
P 		195.4
(3)
P 		54.4
(-2.9)
P 		144
C 104.7
(-0.7)
P 		91.9
(-1.3)
P 		65.4
(-2.6)
P 		141
(1)
P 		183.4
(3)
P 		56.9
(-3)
P 		127
avr 77.3
(-1.6) 		92.3
(-0.9) 		58.4
(-2.5) 		162.4
(2.5) 		172.9
(3) 		48.5
(-3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 187124_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5850
Sequence Type Exemplar sequence
Representative Public ID K01A2.11B NCBI
Target Description K01A2.11B /REP_DB=WormBase Gene ID /WP=CE19521 /TR=Q9TZ47 /GB=AAC69511.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027055(11), NM_061310(11), NM_061311(11), NM_182163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027055 NCBI Caenorhabditis elegans Calcium BiNding protein homolog family member (cbn-1) (cbn-1) mRNA, complete cds. 11/11 None
NM_061310 NCBI Caenorhabditis elegans Calcium BiNding protein homolog family member (cbn-1) (cbn-1) mRNA, complete cds. 11/11 None
NM_061311 NCBI Caenorhabditis elegans Calcium BiNding protein homolog family member (cbn-1) (cbn-1) mRNA, complete cds. 11/11 None
NM_182163 NCBI Caenorhabditis elegans Calcium BiNding protein homolog family member (cbn-1) (cbn-1) mRNA, complete cds. 11/11 None
SNAP00000016840 ENSEMBL cdna:SNAP chromosome:CEL140:II:328630:332510:-1 11/11 None
GENEFINDER00000016847 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:328630:332510:-1 11/11 None
K01A2.11c ENSEMBL cdna:known chromosome:CEL140:II:328563:332512:-1 gene:K01A2.11 11/11 None
K01A2.11a ENSEMBL cdna:known chromosome:CEL140:II:328650:332510:-1 gene:K01A2.11 11/11 None
K01A2.11b ENSEMBL cdna:known chromosome:CEL140:II:329807:332510:-1 gene:K01A2.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:329916-332510(-) 100.0 100.0
Public Domain and Genome References
Ensembl K01A2.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAX55690 Calcium binding protein homolog protein 1, isoform d [Caenorhabditis elegans] ref|NP_001022226.1| Calcium BiNding protein homolog family member (cbn-1) [Caenorhabditis elegans] 0.0
blast AAC69510 Calcium binding protein homolog protein 1, isoform a [Caenorhabditis elegans] ref|NP_493711.2| Calcium BiNding protein homolog family member (cbn-1) [Caenorhabditis elegans] 0.0
blast AAC69511 Calcium binding protein homolog protein 1, isoform b [Caenorhabditis elegans] ref|NP_493712.1| Calcium BiNding protein homolog family member (cbn-1) [Caenorhabditis elegans] 0.0
blast AAO38624 Calcium binding protein homolog protein 1, isoform c [Caenorhabditis elegans] ref|NP_871963.1| Calcium BiNding protein homolog family member (cbn-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.3.1.Di-heme cytochrome c SoxA All alpha proteins; Cytochrome c; Cytochrome c; Di-heme cytochrome c SoxA 0.280000001192093
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0099
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 5.3E-4
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0073
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.62
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.0020
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.029
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.46
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.1
Pfam IPR002048 EMBL-EBI Calcium-binding EF-hand 0.31
Sequence
Target Sequence 
>C. ELEGANS:187124_S_AT
gagttgccttcgagcattacggattcgatgaagccacattggcaccgttctttggtcaag
ctgatgagaatgaagatgggcaactggataatgtagagtttgccggctttcgatcagtca
ttcgtgctcgatcagtcagagatgccatggataaaatgaagagaattgatacaaatgggg
atggtcttgtatcaaatgcagaagccactgattccacgaaaaaggaggatgatatggatt
ctgaggagactttagcgctattcaatattgctgatcagaacaaaagcggaaagttggaca
aagtagagctagcagattttaatcgattggtcaggttaagctccattaaatttgcaaccg
atcattttaaggaattcgatttggacggaaatgacgctgtaacatttgacgagattgctt
tgctcattgagcaaaaatatggaatccccagaagcatgattaagacatttttcgatcgca
tcgatgtggatggctccggtgatttgatgcctgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTGCCTTCGAGCATTACGGATT 669 387 866 Antisense
GATGAAGCCACATTGGCACCGTTCT 592 411 892 Antisense
TGGCACCGTTCTTTGGTCAAGCTGA 263 545 905 Antisense
ATGTAGAGTTTGCCGGCTTTCGATC 308 47 956 Antisense
GGCTTTCGATCAGTCATTCGTGCTC 616 537 970 Antisense
GTCATTCGTGCTCGATCAGTCAGAG 448 467 982 Antisense
AATGCAGAAGCCACTGATTCCACGA 233 165 1060 Antisense
TTCTGAGGAGACTTTAGCGCTATTC 678 693 1104 Antisense
GACGAGATTGCTTTGCTCATTGAGC 393 379 1273 Antisense
GATCGCATCGATGTGGATGGCTCCG 650 415 1339 Antisense
TGGCTCCGGTGATTTGATGCCTGCG 701 543 1356 Antisense
Sequence Source Affymetrix Proprietary Database