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[187123_at]

Description T09B9.3 /REP_DB=WormBase Gene ID /WP=CE01651 /TR=SW:Q10049 /GB=CAA87343.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 13      4grp_high_8_8 > 25      6grp_total > 13      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 303
1 2 3 4 range
A 334.8
(3)
P 		135.2
(-1.9)
A 		90.3
(-3)
P 		138
(-1.8)
P 		245
B 287.9
(3)
P 		143
(-2.1)
P 		116.6
(-3)
P 		137.4
(-2.3)
P 		171
C 393
(3)
P 		152.1
(-2.1)
M 		107.9
(-3)
P 		163.2
(-1.8)
P 		285
avr 338.6
(3) 		143.4
(-2) 		104.9
(-3) 		146.2
(-1.9) 		234

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 198
1 2 3 4 5 6 range
A 249.8
(3)
P 		169.9
(0.2)
P 		225.5
(2.1)
P 		140.9
(-0.8)
P 		114.5
(-1.7)
P 		78.6
(-3)
A 		171
B 223.8
(1.3)
P 		276.8
(3)
P 		142.9
(-1.2)
P 		156.8
(-0.8)
P 		84.8
(-3)
P 		93.1
(-2.7)
P 		192
C 194.9
(1.3)
P 		240.7
(3)
P 		139.4
(-0.8)
P 		184.4
(0.9)
P 		82.3
(-3)
P 		101.8
(-2.3)
P 		158
avr 222.8
(2.7) 		229.1
(3) 		169.3
(0.4) 		160.7
(0) 		93.9
(-2.9) 		91.2
(-3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 121.9
(3)
P 		29.3
(-2.5)
A 		23.6
(-2.8)
P 		20.2
(-3)
P 		102
B 91.8
(3)
P 		35.3
(-2.2)
P 		27
(-3)
P 		29.3
(-2.8)
P 		65
C 130.1
(3)
P 		43.7
(-2.1)
M 		37.6
(-2.4)
P 		27.5
(-3)
P 		103
avr 114.6
(3) 		36.1
(-2.3) 		29.4
(-2.8) 		25.7
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 73
1 2 3 4 5 6 range
A 46
(0.9)
P 		60.4
(3)
P 		49.1
(1.4)
P 		35.7
(-0.6)
P 		34.5
(-0.8)
P 		19.1
(-3)
A 		41
B 77.9
(1.5)
P 		92.1
(3)
P 		34.7
(-3)
P 		41.5
(-2.3)
P 		34.5
(-3)
P 		34.7
(-3)
P 		58
C 72.2
(2.8)
P 		73.4
(3)
P 		35.5
(-1.9)
P 		37.1
(-1.7)
P 		26.6
(-3)
P 		34.1
(-2)
P 		47
avr 65.4
(1.7) 		75.3
(3) 		39.8
(-1.6) 		38.1
(-1.9) 		31.9
(-2.7) 		29.3
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187123_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16058
Sequence Type Exemplar sequence
Representative Public ID T09B9.3 NCBI
Target Description T09B9.3 /REP_DB=WormBase Gene ID /WP=CE01651 /TR=SW:Q10049 /GB=CAA87343.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077237(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077237 NCBI Caenorhabditis elegans T09B9.3 (T09B9.3) mRNA, complete cds. 11/11 None
SNAP00000010998 ENSEMBL cdna:SNAP chromosome:CEL140:X:9759283:9761212:-1 10/11 None
GENEFINDER00000011004 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9759283:9761212:-1 11/11 None
T09B9.3 ENSEMBL cdna:known chromosome:CEL140:X:9759283:9761212:-1 gene:T09B9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9759282-9761212(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T09B9.3
Entrez Gene 188321 Entrez gene
SwissProt Q10049 EMBL-EBI
WormBase CE34091 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6071 glycerol metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8889 glycerophosphodiester phosphodiesterase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA87343 Hypothetical protein T09B9.3 [Caenorhabditis elegans] ref|NP_509638.2| T09B9.3 [Caenorhabditis elegans] sp|Q10049|YRU3_CAEEL Hypothetical protein T09B9.3 in chromosome X precursor 1.0E-163
blast CAA87343 Hypothetical protein T09B9.3 [Caenorhabditis elegans] ref|NP_509638.2| T09B9.3 [Caenorhabditis elegans] sp|Q10049|YRU3_CAEEL Hypothetical protein T09B9.3 in chromosome X precursor 1.0E-140
blast CAE69739 Hypothetical protein CBG16011 [Caenorhabditis briggsae] 1.0E-106
blast AAB52706 Hypothetical protein ZC155.4 [Caenorhabditis elegans] ref|NP_498106.1| ZC155.4 [Caenorhabditis elegans] 9.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 1.9E-9
Pfam IPR004129 EMBL-EBI Glycerophosphoryl diester phosphodiesterase 7.6E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509638.2 2 5-27,29-48
T09B9.3 2 5-27,29-48
SNAP00000010998 2 5-27,29-48
GENEFINDER00000011004 2 5-27,29-48
Sequence
Target Sequence 
>C. ELEGANS:187123_AT
gaatgttaattgttcttctcccagatagcgtcgacactgacaatgcaacatacattgtcg
atgaaacacattggattcaaatgagccagcttaatgtttatggtggaaataatggcacta
ttttgacattcgatgaagcagtttcctggtgcgaggcaaacaaaatgaatatgatctggc
atattccttccttttcttccgatctgctcacatacctccgcaacaaaataatgcaggata
gcttgtatgacaaggttgccgtgacaacgtacaacctcattgctgctggaaggatcagat
gtactgatagacaattatcactcctattaccaagttttcttggggtcgacttcctcgtca
caagtgtcgatgacgctgatagagctcttattgtggaatcctcagcttctggaatgagaa
ccataatatacgacatggaaactgcaaccgagcgtaattactttgccaatcagatggagc
taccaatgatagtaaatgatcttgtttctctccttggcactggtaattcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGTTAATTGTTCTTCTCCCAGA 522 331 356 Antisense
TTCTCCCAGATAGCGTCGACACTGA 4 693 371 Antisense
TGAAGCAGTTTCCTGGTGCGAGGCA 83 575 489 Antisense
TATGATCTGGCATATTCCTTCCTTT 104 657 525 Antisense
TGACAACGTACAACCTCATTGCTGC 217 571 617 Antisense
GACAATTATCACTCCTATTACCAAG 565 363 665 Antisense
CGACTTCCTCGTCACAAGTGTCGAT 500 245 702 Antisense
TATTGTGGAATCCTCAGCTTCTGGA 693 663 744 Antisense
ACCGAGCGTAATTACTTTGCCAATC 392 87 802 Antisense
AGTAAATGATCTTGTTTCTCTCCTT 540 61 846 Antisense
TCTCCTTGGCACTGGTAATTCTTCA 190 611 864 Antisense
Sequence Source Affymetrix Proprietary Database