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[187122_at]

Description Y57A10A.32 /REP_DB=WormBase Gene ID /WP=CE22612 /TR=Q9NA70 /GB=CAB55037.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 2.8
(-2.9)
A 		6.1
(-0)
A 		2.7
(-3)
A 		9.6
(3)
A 		7
B 4.1
(3)
A 		2.6
(-0.7)
A 		2.5
(-1)
A 		1.7
(-3)
A 		2
C 2
(-3)
A 		6.6
(-2.4)
A 		6.9
(-2.3)
A 		46.2
(3)
A 		44
avr 3
(-3) 		5.1
(-2.2) 		4
(-2.6) 		19.2
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 3.9
(-2)
A 		13.1
(3)
A 		10.1
(1.4)
A 		3
(-2.5)
A 		6.1
(-0.8)
A 		2
(-3)
A 		11
B 2.4
(-3)
A 		7.1
(-1.8)
A 		25
(3)
A 		15.1
(0.4)
A 		4.4
(-2.5)
A 		14
(0.1)
A 		23
C 6.1
(-0.3)
A 		5.6
(-0.7)
A 		2.8
(-2.6)
A 		5.4
(-0.8)
A 		11
(3)
A 		2.2
(-3)
A 		9
avr 4.1
(-3) 		8.6
(0.2) 		12.6
(3) 		7.8
(-0.4) 		7.2
(-0.8) 		6.1
(-1.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1
(-0.4)
A 		1.3
(2.1)
A 		0.7
(-3)
A 		1.4
(3)
A 		1
B 1.3
(3)
A 		0.6
(-1.7)
A 		0.6
(-1.7)
A 		0.4
(-3)
A 		1
C 0.7
(-3)
A 		1.9
(-2)
A 		2.4
(-1.6)
A 		7.8
(3)
A 		7
avr 1
(-3) 		1.3
(-2.2) 		1.2
(-2.5) 		3.2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-2.7)
A 		4.7
(3)
A 		2.2
(-0.6)
A 		0.8
(-2.6)
A 		1.8
(-1.1)
A 		0.5
(-3)
A 		4
B 0.8
(-3)
A 		2.4
(-1.2)
A 		6.1
(3)
A 		4
(0.6)
A 		1.8
(-1.9)
A 		5.2
(2)
A 		5
C 2.3
(0.3)
A 		1.7
(-0.9)
A 		0.7
(-3)
A 		1.1
(-2.2)
A 		3.6
(3)
A 		0.7
(-3)
A 		3
avr 1.3
(-3) 		2.9
(2.6) 		3
(3) 		2
(-0.5) 		2.4
(0.9) 		2.1
(-0.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2951
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.32 NCBI
Target Description Y57A10A.32 /REP_DB=WormBase Gene ID /WP=CE22612 /TR=Q9NA70 /GB=CAB55037.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064209(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064209 NCBI Caenorhabditis elegans Y57A10A.32 (Y57A10A.32) mRNA, complete cds. 11/11 None
SNAP00000026037 ENSEMBL cdna:SNAP chromosome:CEL140:II:12289308:12299971:1 11/11 None
GENEFINDER00000026046 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12289308:12299976:1 11/11 None
Y57A10A.32 ENSEMBL cdna:known chromosome:CEL140:II:12299515:12299976:1 gene:Y57A10A.32 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12299511-12299973(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57A10A.32
Entrez Gene 3565417 Entrez gene
SwissProt Q9NA70 EMBL-EBI
WormBase CE22612 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55036 Hypothetical protein Y57A10A.31 [Caenorhabditis elegans] ref|NP_496609.1| Y57A10A.31 [Caenorhabditis elegans] 0.0
blast CAE73475 Hypothetical protein CBG20927 [Caenorhabditis briggsae] 0.0
blast CAE68324 Hypothetical protein CBG14039 [Caenorhabditis briggsae] 0.0
blast CAB55037 Hypothetical protein Y57A10A.32 [Caenorhabditis elegans] ref|NP_496610.1| Y57A10A.32 [Caenorhabditis elegans] 1.0E-61
Sequence
Target Sequence 
>C. ELEGANS:187122_AT
tgctccacgagccgaagatgatccaatgttcttcgatgagcacggctttaccgacgacga
tgacagtgacgctgacgctgatgatgaagcattcgtcgctgcaatctatccacaacaaca
cgcgaatcgcgatcaattcgccaattatcgtcggaatgctgcggcgttcgaagagccgcc
ggcacctccaccaccgccaccgccacctcaatacattcgagacttgccacaattgttgat
cgacacgtttccgacgatttacggcgatccggaaacccgtgtggattacgtggattttgt
aaatagcgcgcagacacaggatcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCACGAGCCGAAGATGATCCA 323 581 72 Antisense
ATGTTCTTCGATGAGCACGGCTTTA 579 45 97 Antisense
GCACGGCTTTACCGACGACGATGAC 566 299 111 Antisense
GACGATGACAGTGACGCTGACGCTG 148 379 127 Antisense
GATGAAGCATTCGTCGCTGCAATCT 246 413 154 Antisense
TCGCTGCAATCTATCCACAACAACA 50 601 167 Antisense
CAATTATCGTCGGAATGCTGCGGCG 57 181 213 Antisense
TGCGGCGTTCGAAGAGCCGCCGGCA 216 581 231 Antisense
ACCGCCACCTCAATACATTCGAGAC 431 89 270 Antisense
GACACGTTTCCGACGATTTACGGCG 601 365 313 Antisense
ATAGCGCGCAGACACAGGATCAGTT 13 21 374 Antisense
Sequence Source Affymetrix Proprietary Database