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[187121_at]

Description Y105C5A.24 /REP_DB=WormBase Gene ID /WP=CE23205 /TR=Q9NF64 /GB=CAB55004.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 42      6grp_total > 31      4grp_total > 62      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 365
1 2 3 4 range
A 396.3
(3)
P 		207.7
(-0.1)
A 		290.1
(1.3)
A 		31.5
(-3)
A 		365
B 306.1
(3)
P 		205.2
(0.7)
A 		236.5
(1.4)
M 		43.7
(-3)
A 		262
C 320.6
(3)
P 		186.4
(-0)
A 		309.1
(2.7)
P 		56.1
(-3)
A 		265
avr 341
(3) 		199.8
(0.1) 		278.6
(1.7) 		43.8
(-3) 		297

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 227
1 2 3 4 5 6 range
A 348.9
(1.6)
P 		361.8
(2.3)
P 		353.9
(1.9)
P 		373.8
(3)
P 		352.1
(1.8)
P 		266.8
(-3)
P 		107
B 295.6
(-1.2)
P 		365
(1.5)
P 		401.7
(3)
P 		330.5
(0.2)
P 		293.7
(-1.3)
P 		251.4
(-3)
P 		150
C 310.6
(-1.3)
P 		424.5
(1.7)
P 		472.4
(3)
P 		431.2
(1.9)
P 		259
(-2.6)
P 		245.3
(-3)
A 		227
avr 318.4
(-0.5) 		383.8
(2) 		409.3
(3) 		378.5
(1.8) 		301.6
(-1.2) 		254.5
(-3) 		155
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 144.3
(3)
P 		45.1
(-1.3)
A 		75.8
(0.1)
A 		4.6
(-3)
A 		140
B 97.6
(3)
P 		50.7
(-0.2)
A 		54.8
(0.1)
M 		9.3
(-3)
A 		88
C 106.1
(2.9)
P 		53.6
(-0.3)
A 		107.7
(3)
P 		9.5
(-3)
A 		98
avr 116
(3) 		49.8
(-0.7) 		79.4
(1) 		7.8
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 64.3
(-3)
P 		128.7
(3)
P 		77.1
(-1.8)
P 		94.8
(-0.2)
P 		106.2
(0.9)
P 		65
(-2.9)
P 		64
B 102.8
(-0.3)
P 		121.5
(3)
P 		97.5
(-1.2)
P 		87.5
(-3)
P 		119.3
(2.6)
P 		93.8
(-1.9)
P 		34
C 115.1
(1.2)
P 		129.5
(3)
P 		120.2
(1.8)
P 		86.7
(-2.4)
P 		83.8
(-2.8)
P 		82.1
(-3)
A 		47
avr 94.1
(-1.2) 		126.6
(3) 		98.3
(-0.7) 		89.7
(-1.8) 		103.1
(-0) 		80.3
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 187121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8698
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.24 NCBI
Target Description Y105C5A.24 /REP_DB=WormBase Gene ID /WP=CE23205 /TR=Q9NF64 /GB=CAB55004.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070487 NCBI Caenorhabditis elegans Y105C5A.24 (Y105C5A.24) mRNA, complete cds. 11/11 None
SNAP00000033720 ENSEMBL cdna:SNAP chromosome:CEL140:IV:15849954:15852791:1 10/11 None
GENEFINDER00000033775 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15849954:15852699:1 11/11 None
Y105C5A.24 ENSEMBL cdna:known chromosome:CEL140:IV:15849903:15852846:1 gene:Y105C5A.24 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15849959-15852705(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.24
Entrez Gene 190882 Entrez gene
SwissProt Q9NF64 EMBL-EBI
WormBase CE36218 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB55004 Hypothetical protein Y105C5A.24 [Caenorhabditis elegans] ref|NP_502888.2| Y105C5A.24 [Caenorhabditis elegans] 0.0
blast CAB60998 Hypothetical protein F52F12.3 [Caenorhabditis elegans] ref|NP_492620.1| More Of MS family member (mom-4) [Caenorhabditis elegans] gb|AAD37359.1| protein kinase MOM-4 [Caenorhabditis elegans] gb|AAD39816.1| MOM-4 [Caenorhabditis elegans] 1.0E-154
blast CAE60273 Hypothetical protein CBG03852 [Caenorhabditis briggsae] 1.0E-152
blast CAB60998 Hypothetical protein F52F12.3 [Caenorhabditis elegans] ref|NP_492620.1| More Of MS family member (mom-4) [Caenorhabditis elegans] gb|AAD37359.1| protein kinase MOM-4 [Caenorhabditis elegans] gb|AAD39816.1| MOM-4 [Caenorhabditis elegans] 1.0E-138
blast CAE60273 Hypothetical protein CBG03852 [Caenorhabditis briggsae] 1.0E-137
Protein Families
Method ID Description E-Value
hanks 2.3.1 CaMK Group; CaMK Other; MAPKAP2 5.0E-56
hanks 2.3.1 CaMK Group; CaMK Other; MAPKAP2 4.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.8E-48
Pfam IPR000719 EMBL-EBI Protein kinase 5.0E-45
Pfam IPR000719 EMBL-EBI Protein kinase 0.18
Pfam IPR000719 EMBL-EBI Protein kinase 6.2E-35
Sequence
Target Sequence 
>C. ELEGANS:187121_AT
taatccagccagtagaccgacatctgcagattgtgtagagtatttcaggtgtctgagaag
tgagtacccaaatggaaatgtccccctatgggatccggcctccggtgcatcaaatactgt
caaaatccccaagtctcagccaggaggacgttctccattgcctctacccaaaacagagat
aactccagatgtaaaacctaaagaagttgccccagcaaaagttcaggaaacgccagcact
tcttccagataccctaaaagtacctaaagtagaacgccaaattagcaatgaggaagagaa
acagaaaatttttatgacagctctttcgaatgaggatacgaggccaattgatccaaatga
gggggatgaaagttcacttgagctctaccatcaacattgtctggtcaatctgaattatgc
cgaagttttgttagccaagaaggaggcgataaatgaaaaacacaaattggtccaaaagtg
ggcagaacacgaacgaactttggaacttctcgaacgtatcgcttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCAGCCAGTAGACCGACATCT 489 633 753 Antisense
TGGAAATGTCCCCCTATGGGATCCG 705 545 825 Antisense
CCTCCGGTGCATCAAATACTGTCAA 443 267 851 Antisense
AATACTGTCAAAATCCCCAAGTCTC 624 171 865 Antisense
AGCCAGGAGGACGTTCTCCATTGCC 390 83 890 Antisense
TCCATTGCCTCTACCCAAAACAGAG 483 591 906 Antisense
TTCAGGAAACGCCAGCACTTCTTCC 609 683 974 Antisense
GCACTTCTTCCAGATACCCTAAAAG 635 315 988 Antisense
GAAAGTTCACTTGAGCTCTACCATC 484 357 1120 Antisense
GAGCTCTACCATCAACATTGTCTGG 569 387 1132 Antisense
GGAACTTCTCGAACGTATCGCTTGC 244 529 1254 Antisense
Sequence Source Affymetrix Proprietary Database